Sequence Similarity Clusters for the Entities in PDB 5XOG

Entity #1 | Chains: A
DNA-directed RNA polymerase subunit protein, length: 1743 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10140
95 % 1 5 10178
90 % 1 5 10054
70 % 7 123 366
50 % 7 135 382
40 % 7 135 408
30 % 7 135 409
Entity #10 | Chains: J
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11034
95 % 1 5 11008
90 % 1 5 10864
70 % 8 170 246
50 % 8 178 235
40 % 8 178 254
30 % 8 178 260
Entity #11 | Chains: K
RNA polymerase II subunit B12.5 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10928
95 % 1 5 10910
90 % 1 5 10759
70 % 1 5 10219
50 % 7 125 423
40 % 7 127 437
30 % 7 127 441
Entity #12 | Chains: L
RNA polymerase subunit ABC10-alpha protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48970
95 % 1 5 11005
90 % 1 5 10861
70 % 1 5 10311
50 % 8 154 300
40 % 8 154 318
30 % 8 154 323
Entity #13 | Chains: P
RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*AP*UP*CP*GP*AP*GP*AP*GP*GP*U)-3') rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
DNA (39-MER) dna, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
DNA (30-MER) dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: M
Transcription elongation factor 1 homolog protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71954
95 % 1 1 49756
90 % 1 1 47174
70 % 1 1 41340
50 % 1 2 26255
40 % 1 2 23149
30 % 1 2 19607
Entity #17 | Chains: W
Spt4/5 complex component protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72090
95 % 1 1 49869
90 % 1 1 47283
70 % 1 1 41436
50 % 1 1 35339
40 % 1 1 31151
30 % 1 1 26280
Entity #2 | Chains: B
DNA-directed RNA polymerase subunit beta protein, length: 1227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10144
95 % 1 5 10182
90 % 1 5 10058
70 % 7 127 346
50 % 7 137 374
40 % 7 145 343
30 % 7 156 312
Entity #3 | Chains: C
RNA polymerase II third largest subunit B44, part of central core protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10422
95 % 1 5 10449
90 % 1 5 10324
70 % 1 5 9813
50 % 1 5 8896
40 % 1 5 8145
30 % 1 5 7185
Entity #4 | Chains: D
RNA polymerase II subunit B32 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10722
95 % 1 5 10723
90 % 1 5 10573
70 % 1 5 10043
50 % 3 72 738
40 % 3 72 774
30 % 3 72 766
Entity #5 | Chains: E
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10661
95 % 1 5 10653
90 % 1 5 10511
70 % 9 159 266
50 % 9 161 279
40 % 9 171 274
30 % 9 171 282
Entity #6 | Chains: F
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10784
95 % 1 5 10785
90 % 1 5 10636
70 % 1 5 10109
50 % 8 166 270
40 % 8 166 285
30 % 8 166 295
Entity #7 | Chains: G
RNA polymerase II subunit protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10747
95 % 1 5 10744
90 % 1 5 10595
70 % 1 5 10071
50 % 5 85 568
40 % 5 85 605
30 % 5 85 596
Entity #8 | Chains: H
RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10827
95 % 1 5 10823
90 % 1 5 10672
70 % 1 5 10146
50 % 8 159 284
40 % 8 159 300
30 % 8 172 280
Entity #9 | Chains: I
DNA-directed RNA polymerase subunit protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10936
95 % 1 5 10923
90 % 1 5 10773
70 % 7 124 365
50 % 7 126 412
40 % 7 126 442
30 % 7 137 400

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures