Sequence Similarity Clusters for the Entities in PDB 5XOG

Entity #1 | Chains: A
DNA-directed RNA polymerase subunit protein, length: 1743 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11482
95 % 1 5 11084
90 % 1 5 10929
70 % 7 130 352
50 % 7 143 376
40 % 7 143 407
30 % 7 143 408
Entity #10 | Chains: J
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11108
95 % 1 5 10739
90 % 1 5 10591
70 % 8 178 234
50 % 8 186 230
40 % 8 186 256
30 % 8 186 276
Entity #11 | Chains: K
RNA polymerase II subunit B12.5 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11487
95 % 1 5 11087
90 % 1 5 10931
70 % 1 5 10330
50 % 7 132 411
40 % 7 134 427
30 % 7 134 437
Entity #12 | Chains: L
RNA polymerase subunit ABC10-alpha protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46336
95 % 1 5 11463
90 % 1 5 10932
70 % 1 5 10331
50 % 8 161 294
40 % 8 161 322
30 % 8 161 330
Entity #13 | Chains: P
RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*AP*UP*CP*GP*AP*GP*AP*GP*GP*U)-3') rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
DNA (39-MER) dna, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
DNA (30-MER) dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: M
Transcription elongation factor 1 homolog protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57702
95 % 1 1 47239
90 % 1 1 44884
70 % 1 1 39458
50 % 1 1 33479
40 % 1 1 29338
30 % 1 1 24489
Entity #17 | Chains: W
Spt4/5 complex component protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57703
95 % 1 1 47240
90 % 1 1 44885
70 % 1 1 39459
50 % 1 1 33480
40 % 1 1 29339
30 % 1 1 24490
Entity #2 | Chains: B
DNA-directed RNA polymerase subunit beta protein, length: 1227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11481
95 % 1 5 11083
90 % 1 5 10928
70 % 7 134 334
50 % 7 145 371
40 % 7 153 350
30 % 17 306 144
Entity #3 | Chains: C
RNA polymerase II third largest subunit B44, part of central core protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11421
95 % 1 5 11039
90 % 1 5 10882
70 % 1 5 10285
50 % 1 5 9258
40 % 1 5 8378
30 % 1 5 7251
Entity #4 | Chains: D
RNA polymerase II subunit B32 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11483
95 % 1 5 11085
90 % 1 5 10930
70 % 1 5 10329
50 % 3 74 744
40 % 3 74 777
30 % 3 74 779
Entity #5 | Chains: E
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10924
95 % 1 5 10586
90 % 1 5 10440
70 % 9 166 254
50 % 9 168 271
40 % 9 179 281
30 % 9 179 295
Entity #6 | Chains: F
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10923
95 % 1 5 10585
90 % 1 5 10439
70 % 1 5 9866
50 % 8 174 260
40 % 8 174 288
30 % 8 174 301
Entity #7 | Chains: G
RNA polymerase II subunit protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11279
95 % 1 5 10899
90 % 1 5 10737
70 % 1 5 10149
50 % 5 88 559
40 % 5 88 601
30 % 5 88 605
Entity #8 | Chains: H
RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10921
95 % 1 5 10583
90 % 1 5 10437
70 % 1 5 9864
50 % 8 166 280
40 % 8 166 312
30 % 8 180 292
Entity #9 | Chains: I
DNA-directed RNA polymerase subunit protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11460
95 % 1 5 11069
90 % 1 5 10914
70 % 7 131 348
50 % 7 133 401
40 % 7 133 432
30 % 7 144 405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures