Sequence Similarity Clusters for the Entities in PDB 5XOG

Entity #1 | Chains: A
DNA-directed RNA polymerase subunit protein, length: 1743 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 9836
95 % 1 5 9903
90 % 1 5 9793
70 % 7 120 356
50 % 7 132 368
40 % 7 132 393
30 % 7 132 397
Entity #10 | Chains: J
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10698
95 % 1 5 10708
90 % 1 5 10576
70 % 8 159 250
50 % 8 167 246
40 % 8 167 264
30 % 8 167 270
Entity #11 | Chains: K
RNA polymerase II subunit B12.5 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10594
95 % 1 5 10613
90 % 1 5 10477
70 % 1 5 9968
50 % 7 122 416
40 % 7 124 434
30 % 7 124 435
Entity #12 | Chains: L
RNA polymerase subunit ABC10-alpha protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47683
95 % 1 5 10705
90 % 1 5 10573
70 % 1 5 10058
50 % 8 143 313
40 % 8 143 328
30 % 8 143 336
Entity #13 | Chains: P
RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*AP*UP*CP*GP*AP*GP*AP*GP*GP*U)-3') rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
DNA (39-MER) dna, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
DNA (30-MER) dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: M
Transcription elongation factor 1 homolog protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70083
95 % 1 1 48501
90 % 1 1 46034
70 % 1 1 40436
50 % 1 2 25671
40 % 1 2 22637
30 % 1 2 19165
Entity #17 | Chains: W
Spt4/5 complex component protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70217
95 % 1 1 48612
90 % 1 1 46142
70 % 1 1 40531
50 % 1 1 34598
40 % 1 1 30505
30 % 1 1 25723
Entity #2 | Chains: B
DNA-directed RNA polymerase subunit beta protein, length: 1227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 9840
95 % 1 5 9907
90 % 1 5 9797
70 % 7 124 339
50 % 7 134 357
40 % 7 142 324
30 % 7 145 330
Entity #3 | Chains: C
RNA polymerase II third largest subunit B44, part of central core protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10111
95 % 1 5 10166
90 % 1 5 10057
70 % 1 5 9572
50 % 1 5 8682
40 % 1 5 7950
30 % 1 5 7017
Entity #4 | Chains: D
RNA polymerase II subunit B32 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10395
95 % 1 5 10431
90 % 1 5 10297
70 % 1 5 9792
50 % 3 69 753
40 % 3 69 785
30 % 3 69 780
Entity #5 | Chains: E
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10334
95 % 1 5 10360
90 % 1 5 10235
70 % 9 148 271
50 % 9 150 291
40 % 9 160 284
30 % 9 160 293
Entity #6 | Chains: F
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10453
95 % 1 5 10492
90 % 1 5 10358
70 % 1 5 9858
50 % 8 155 279
40 % 8 155 298
30 % 8 155 307
Entity #7 | Chains: G
RNA polymerase II subunit protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10419
95 % 1 5 10454
90 % 1 5 10320
70 % 1 5 9822
50 % 5 82 567
40 % 5 82 605
30 % 5 82 595
Entity #8 | Chains: H
RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10495
95 % 1 5 10528
90 % 1 5 10392
70 % 1 5 9894
50 % 8 148 296
40 % 8 148 311
30 % 8 161 292
Entity #9 | Chains: I
DNA-directed RNA polymerase subunit protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10602
95 % 1 5 10625
90 % 1 5 10488
70 % 7 121 355
50 % 7 123 406
40 % 7 123 436
30 % 7 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.