Sequence Similarity Clusters for the Entities in PDB 5XOG

Entity #1 | Chains: A
DNA-directed RNA polymerase subunit protein, length: 1743 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 9987
95 % 1 5 10048
90 % 1 5 9927
70 % 7 121 360
50 % 7 133 368
40 % 7 133 394
30 % 7 133 395
Entity #10 | Chains: J
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10867
95 % 1 5 10863
90 % 1 5 10719
70 % 8 160 256
50 % 8 168 247
40 % 8 168 268
30 % 8 168 274
Entity #11 | Chains: K
RNA polymerase II subunit B12.5 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10760
95 % 1 5 10765
90 % 1 5 10617
70 % 1 5 10078
50 % 7 123 415
40 % 7 125 433
30 % 7 125 439
Entity #12 | Chains: L
RNA polymerase subunit ABC10-alpha protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48275
95 % 1 5 10860
90 % 1 5 10716
70 % 1 5 10170
50 % 8 144 315
40 % 8 144 334
30 % 8 144 343
Entity #13 | Chains: P
RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*AP*UP*CP*GP*AP*GP*AP*GP*GP*U)-3') rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
DNA (39-MER) dna, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
DNA (30-MER) dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: M
Transcription elongation factor 1 homolog protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71012
95 % 1 1 49151
90 % 1 1 46628
70 % 1 1 40886
50 % 1 2 25930
40 % 1 2 22868
30 % 1 2 19371
Entity #17 | Chains: W
Spt4/5 complex component protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71147
95 % 1 1 49263
90 % 1 1 46737
70 % 1 1 40982
50 % 1 1 34959
40 % 1 1 30827
30 % 1 1 26007
Entity #2 | Chains: B
DNA-directed RNA polymerase subunit beta protein, length: 1227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 9991
95 % 1 5 10052
90 % 1 5 9931
70 % 7 125 343
50 % 7 135 360
40 % 7 143 326
30 % 7 146 333
Entity #3 | Chains: C
RNA polymerase II third largest subunit B44, part of central core protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10265
95 % 1 5 10313
90 % 1 5 10191
70 % 1 5 9683
50 % 1 5 8777
40 % 1 5 8038
30 % 1 5 7096
Entity #4 | Chains: D
RNA polymerase II subunit B32 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10554
95 % 1 5 10580
90 % 1 5 10434
70 % 1 5 9904
50 % 3 70 750
40 % 3 70 788
30 % 3 70 780
Entity #5 | Chains: E
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10493
95 % 1 5 10511
90 % 1 5 10372
70 % 9 149 275
50 % 9 151 295
40 % 9 161 290
30 % 9 161 296
Entity #6 | Chains: F
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10616
95 % 1 5 10642
90 % 1 5 10497
70 % 1 5 9970
50 % 8 156 282
40 % 8 156 301
30 % 8 156 309
Entity #7 | Chains: G
RNA polymerase II subunit protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10579
95 % 1 5 10602
90 % 1 5 10457
70 % 1 5 9934
50 % 5 83 569
40 % 5 83 609
30 % 5 83 597
Entity #8 | Chains: H
RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10658
95 % 1 5 10678
90 % 1 5 10531
70 % 1 5 10006
50 % 8 149 304
40 % 8 149 317
30 % 8 162 293
Entity #9 | Chains: I
DNA-directed RNA polymerase subunit protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 10768
95 % 1 5 10778
90 % 1 5 10629
70 % 7 122 359
50 % 7 124 410
40 % 7 124 440
30 % 7 127 429

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.