5WIT

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution


Sequence Similarity Clusters for the Entities in PDB 5WIT

Entity #1 | Chains: 1A,2A
23S Ribosomal RNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: 1O,2O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 72
95 % 27 171 93
90 % 27 171 97
70 % 28 228 85
50 % 34 392 42
40 % 83 595 21
30 % 83 595 36
Entity #11 | Chains: 1P,2P
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 76
95 % 27 171 100
90 % 27 171 105
70 % 27 171 117
50 % 33 374 54
40 % 33 374 75
30 % 33 374 91
Entity #12 | Chains: 1Q,2Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 169 85
95 % 27 172 92
90 % 27 172 96
70 % 27 199 98
50 % 33 382 45
40 % 33 382 63
30 % 33 382 78
Entity #13 | Chains: 1R,2R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 176 62
95 % 28 176 81
90 % 28 176 84
70 % 28 176 102
50 % 34 373 46
40 % 34 380 58
30 % 34 382 75
Entity #14 | Chains: 1S,2S
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 77
95 % 27 171 101
90 % 27 171 106
70 % 27 171 118
50 % 33 376 53
40 % 33 376 73
30 % 33 376 89
Entity #15 | Chains: 1T,2T
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 153 94
95 % 27 169 105
90 % 27 169 110
70 % 27 169 121
50 % 33 354 67
40 % 33 354 87
30 % 33 354 103
Entity #16 | Chains: 1U,2U
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 80
95 % 27 171 104
90 % 27 171 109
70 % 27 171 120
50 % 33 379 44
40 % 33 387 57
30 % 33 387 76
Entity #17 | Chains: 1V,2V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 70
95 % 27 171 94
90 % 27 171 98
70 % 27 171 111
50 % 27 218 120
40 % 33 374 76
30 % 33 374 92
Entity #18 | Chains: 1W,2W
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 179 64
95 % 29 180 83
90 % 29 180 86
70 % 29 180 104
50 % 35 353 71
40 % 35 353 91
30 % 35 355 105
Entity #19 | Chains: 1X,2X
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 172 69
95 % 27 172 91
90 % 27 172 95
70 % 27 172 110
50 % 27 198 131
40 % 80 459 45
30 % 80 459 62
Entity #2 | Chains: 1B,2B
5S Ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: 1Y,2Y
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 79
95 % 27 171 103
90 % 27 171 108
70 % 27 171 119
50 % 33 377 52
40 % 33 379 70
30 % 33 379 86
Entity #21 | Chains: 1Z,2Z
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 173 68
95 % 28 173 90
90 % 28 173 93
70 % 28 173 109
50 % 28 173 146
40 % 28 173 161
30 % 28 183 170
Entity #22 | Chains: 10,20
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 167 87
95 % 28 172 88
90 % 28 172 91
70 % 28 172 108
50 % 34 378 49
40 % 34 378 68
30 % 34 378 84
Entity #23 | Chains: 11,21
50S ribosomal protein L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 141 102
95 % 27 164 107
90 % 27 164 112
70 % 27 164 125
50 % 27 164 154
40 % 27 164 168
30 % 27 164 186
Entity #24 | Chains: 12,22
50S ribosomal protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 158 90
95 % 27 165 109
90 % 27 165 114
70 % 27 165 127
50 % 27 165 157
40 % 80 419 52
30 % 80 445 66
Entity #25 | Chains: 13,23
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 178 63
95 % 28 178 84
90 % 28 178 88
70 % 28 178 105
50 % 28 178 145
40 % 34 380 66
30 % 34 380 81
Entity #26 | Chains: 14,24
50S ribosomal protein L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 154 98
95 % 27 154 127
90 % 27 154 130
70 % 27 154 148
50 % 27 232 122
40 % 27 243 140
30 % 27 244 150
Entity #27 | Chains: 15,25
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 155 93
95 % 27 166 108
90 % 27 166 113
70 % 27 166 126
50 % 33 370 65
40 % 33 376 74
30 % 33 376 90
Entity #28 | Chains: 16,26
50S ribosomal protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 154 95
95 % 27 154 122
90 % 27 154 125
70 % 27 154 143
50 % 27 174 159
40 % 33 348 98
30 % 33 348 112
Entity #29 | Chains: 17,27
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 75
95 % 27 171 99
90 % 27 171 104
70 % 27 171 116
50 % 27 171 148
40 % 27 171 162
30 % 27 171 179
Entity #3 | Chains: 1D,2D
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 172 78
95 % 27 172 102
90 % 27 172 107
70 % 27 196 99
50 % 33 382 47
40 % 33 382 64
30 % 33 382 79
Entity #30 | Chains: 18,28
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 172 74
95 % 27 172 98
90 % 27 172 103
70 % 27 172 115
50 % 27 200 130
40 % 33 371 77
30 % 33 371 94
Entity #31 | Chains: 19,29
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 126 116
95 % 26 126 144
90 % 26 126 156
70 % 32 320 49
50 % 32 323 88
40 % 32 323 107
30 % 32 323 121
Entity #32 | Chains: 1a,2a
16S Ribosomal RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 1b,2b
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 295 33
95 % 32 296 41
90 % 32 296 46
70 % 32 296 58
50 % 38 448 36
40 % 38 454 47
30 % 38 454 64
Entity #34 | Chains: 1c,2c
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 248 51
95 % 30 248 65
90 % 30 248 70
70 % 30 248 88
50 % 31 323 87
40 % 31 323 105
30 % 31 323 119
Entity #35 | Chains: 1d,2d
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 296 32
95 % 32 296 40
90 % 32 296 45
70 % 32 296 57
50 % 38 458 29
40 % 38 464 42
30 % 38 464 60
Entity #36 | Chains: 1e,2e
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 295 36
95 % 32 295 45
90 % 32 295 49
70 % 32 295 61
50 % 38 459 31
40 % 38 459 44
30 % 38 461 61
Entity #37 | Chains: 1f,2f
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 300 28
95 % 39 306 35
90 % 39 306 39
70 % 39 306 50
50 % 39 306 91
40 % 39 306 113
30 % 46 395 88
Entity #38 | Chains: 1g,2g
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 300 29
95 % 33 300 38
90 % 33 300 42
70 % 33 300 53
50 % 39 397 56
40 % 39 403 72
30 % 39 403 87
Entity #39 | Chains: 1h,2h
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 295 35
95 % 33 295 43
90 % 33 299 43
70 % 33 299 54
50 % 40 463 27
40 % 44 607 18
30 % 44 607 32
Entity #4 | Chains: 1E,2E
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 71
95 % 27 171 95
90 % 27 171 99
70 % 27 171 112
50 % 36 384 51
40 % 36 388 62
30 % 36 389 77
Entity #40 | Chains: 1i,2i
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 199 82
95 % 32 295 47
90 % 32 295 51
70 % 32 295 63
50 % 38 452 35
40 % 38 453 49
30 % 40 589 35
Entity #41 | Chains: 1j,2j
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 294 40
95 % 32 294 49
90 % 32 294 53
70 % 32 294 64
50 % 44 464 25
40 % 46 585 20
30 % 46 587 34
Entity #42 | Chains: 1k,2k
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 295 37
95 % 32 295 46
90 % 32 295 50
70 % 32 295 62
50 % 38 458 32
40 % 42 594 19
30 % 42 594 33
Entity #43 | Chains: 1l,2l
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 263 49
95 % 32 302 37
90 % 32 302 41
70 % 38 472 15
50 % 38 475 24
40 % 38 475 38
30 % 38 475 56
Entity #44 | Chains: 1m,2m
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 296 34
95 % 32 296 42
90 % 32 296 47
70 % 32 296 59
50 % 38 462 30
40 % 38 462 43
30 % 40 591 37
Entity #45 | Chains: 1n,2n
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 294 39
95 % 32 294 48
90 % 32 294 52
70 % 32 298 56
50 % 32 307 92
40 % 32 307 114
30 % 32 307 126
Entity #46 | Chains: 1o,2o
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 300 27
95 % 33 303 36
90 % 33 303 40
70 % 33 303 52
50 % 42 470 26
40 % 42 475 37
30 % 42 475 55
Entity #47 | Chains: 1p,2p
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 290 42
95 % 32 295 44
90 % 32 295 48
70 % 32 295 60
50 % 32 305 93
40 % 38 460 46
30 % 38 460 63
Entity #48 | Chains: 1q,2q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 266 46
95 % 32 292 51
90 % 32 292 55
70 % 32 292 68
50 % 32 292 96
40 % 32 292 118
30 % 32 292 131
Entity #49 | Chains: 1r,2r
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 243 54
95 % 30 249 64
90 % 30 249 68
70 % 30 249 86
50 % 30 249 117
40 % 30 249 139
30 % 30 249 148
Entity #5 | Chains: 1F,2F
50S ribosomal protein L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 156 92
95 % 27 172 96
90 % 27 172 100
70 % 27 172 113
50 % 27 201 129
40 % 34 381 67
30 % 34 381 83
Entity #50 | Chains: 1s,2s
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 298 30
95 % 33 298 39
90 % 33 298 44
70 % 33 298 55
50 % 39 464 28
40 % 39 467 41
30 % 39 467 59
Entity #51 | Chains: 1t,2t
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 255 50
95 % 32 294 50
90 % 32 294 54
70 % 32 294 65
50 % 32 294 94
40 % 32 294 116
30 % 32 294 130
Entity #52 | Chains: 1u,2u
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 285 44
95 % 32 285 54
90 % 32 285 59
70 % 32 285 71
50 % 32 285 100
40 % 32 285 123
30 % 32 285 134
Entity #53 | Chains: 1v,2v
mRNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: 1w,2w
A-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #55 | Chains: 1x,2x
P-site tRNA rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: 1y,2y
E-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: 1G,2G
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 174 66
95 % 30 174 86
90 % 30 174 89
70 % 30 198 96
50 % 37 380 48
40 % 37 380 65
30 % 37 380 80
Entity #7 | Chains: 1H,2H
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 73
95 % 27 171 97
90 % 27 171 101
70 % 27 171 114
50 % 28 231 114
40 % 34 384 60
30 % 83 584 40
Entity #8 | Chains: 1I,2I
50S ribosomal protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 101
95 % 23 142 129
90 % 23 142 132
70 % 23 142 154
50 % 23 147 181
40 % 30 300 109
30 % 30 303 122
Entity #9 | Chains: 1N,2N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 168 86
95 % 27 168 106
90 % 27 168 111
70 % 27 168 124
50 % 33 352 70
40 % 33 352 90
30 % 33 353 104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures