5WIT

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution


Sequence Similarity Clusters for the Entities in PDB 5WIT

Entity #1 | Chains: 1A,2A
23S Ribosomal RNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: 1O,2O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 71
95 % 27 186 89
90 % 27 186 95
70 % 28 251 85
50 % 35 428 48
40 % 84 647 25
30 % 84 647 39
Entity #11 | Chains: 1P,2P
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 75
95 % 27 186 96
90 % 27 186 102
70 % 27 186 119
50 % 34 410 61
40 % 34 410 80
30 % 34 410 90
Entity #12 | Chains: 1Q,2Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 184 83
95 % 27 187 87
90 % 27 187 92
70 % 27 214 96
50 % 34 416 54
40 % 34 416 72
30 % 34 416 83
Entity #13 | Chains: 1R,2R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 191 60
95 % 28 191 76
90 % 28 191 82
70 % 28 191 103
50 % 35 412 50
40 % 35 412 65
30 % 35 414 77
Entity #14 | Chains: 1S,2S
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 76
95 % 27 186 97
90 % 27 186 103
70 % 27 186 120
50 % 34 411 60
40 % 34 411 79
30 % 34 411 88
Entity #15 | Chains: 1T,2T
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 168 95
95 % 27 184 102
90 % 27 184 107
70 % 27 184 123
50 % 34 390 65
40 % 34 390 85
30 % 34 390 95
Entity #16 | Chains: 1U,2U
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 79
95 % 27 186 100
90 % 27 186 106
70 % 27 186 122
50 % 34 415 51
40 % 34 423 63
30 % 34 423 76
Entity #17 | Chains: 1V,2V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 69
95 % 27 186 90
90 % 27 186 96
70 % 27 186 114
50 % 27 236 118
40 % 34 410 81
30 % 34 410 91
Entity #18 | Chains: 1W,2W
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 194 64
95 % 29 195 79
90 % 29 195 85
70 % 29 195 107
50 % 36 385 73
40 % 36 385 91
30 % 36 387 98
Entity #19 | Chains: 1X,2X
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 187 68
95 % 27 187 86
90 % 27 187 91
70 % 27 187 112
50 % 27 245 114
40 % 81 496 40
30 % 81 496 58
Entity #2 | Chains: 1B,2B
5S Ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: 1Y,2Y
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 78
95 % 27 186 99
90 % 27 186 105
70 % 27 186 121
50 % 34 413 59
40 % 34 415 73
30 % 34 415 84
Entity #21 | Chains: 1Z,2Z
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 188 67
95 % 28 188 84
90 % 28 188 89
70 % 28 188 111
50 % 28 188 143
40 % 28 188 158
30 % 28 198 169
Entity #22 | Chains: 10,20
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 182 85
95 % 28 187 83
90 % 28 187 88
70 % 28 187 110
50 % 35 413 56
40 % 35 413 74
30 % 35 413 85
Entity #23 | Chains: 11,21
50S ribosomal protein L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 152 102
95 % 27 178 105
90 % 27 178 110
70 % 27 178 126
50 % 27 178 149
40 % 27 178 163
30 % 27 178 184
Entity #24 | Chains: 12,22
50S ribosomal protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 172 88
95 % 27 180 108
90 % 27 180 113
70 % 27 180 131
50 % 27 180 155
40 % 81 451 60
30 % 81 477 68
Entity #25 | Chains: 13,23
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 193 63
95 % 28 193 80
90 % 28 193 86
70 % 28 193 108
50 % 28 193 140
40 % 35 416 68
30 % 35 416 79
Entity #26 | Chains: 14,24
50S ribosomal protein L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 169 99
95 % 27 169 121
90 % 27 169 127
70 % 27 169 143
50 % 27 253 120
40 % 28 271 135
30 % 28 272 148
Entity #27 | Chains: 15,25
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 170 94
95 % 27 181 106
90 % 27 181 111
70 % 27 181 128
50 % 34 401 64
40 % 34 407 82
30 % 34 407 92
Entity #28 | Chains: 16,26
50S ribosomal protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 167 97
95 % 27 167 118
90 % 27 167 124
70 % 27 167 140
50 % 27 193 154
40 % 34 380 93
30 % 34 380 104
Entity #29 | Chains: 17,27
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 74
95 % 27 186 95
90 % 27 186 101
70 % 27 186 118
50 % 27 186 145
40 % 27 186 160
30 % 27 186 176
Entity #3 | Chains: 1D,2D
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 187 77
95 % 27 187 98
90 % 27 187 104
70 % 27 211 99
50 % 34 417 52
40 % 34 417 70
30 % 34 417 81
Entity #30 | Chains: 18,28
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 187 73
95 % 27 187 94
90 % 27 187 100
70 % 27 187 117
50 % 27 215 130
40 % 34 405 84
30 % 34 405 94
Entity #31 | Chains: 19,29
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 140 115
95 % 26 140 138
90 % 26 140 146
70 % 32 350 51
50 % 32 353 87
40 % 32 353 101
30 % 32 353 116
Entity #32 | Chains: 1a,2a
16S Ribosomal RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 1b,2b
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 315 32
95 % 32 316 47
90 % 32 316 53
70 % 32 316 63
50 % 39 481 36
40 % 39 487 44
30 % 39 487 61
Entity #34 | Chains: 1c,2c
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 262 54
95 % 30 262 70
90 % 30 262 74
70 % 30 262 86
50 % 31 338 89
40 % 31 338 105
30 % 31 338 119
Entity #35 | Chains: 1d,2d
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 316 31
95 % 32 316 46
90 % 32 316 52
70 % 32 316 61
50 % 39 495 27
40 % 39 501 36
30 % 39 501 56
Entity #36 | Chains: 1e,2e
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 315 35
95 % 32 315 51
90 % 32 315 56
70 % 32 315 66
50 % 39 491 31
40 % 39 491 42
30 % 39 493 59
Entity #37 | Chains: 1f,2f
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 320 28
95 % 39 326 40
90 % 39 326 45
70 % 39 326 55
50 % 39 326 92
40 % 39 326 110
30 % 47 431 87
Entity #38 | Chains: 1g,2g
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 320 29
95 % 33 320 43
90 % 33 320 49
70 % 33 320 59
50 % 40 434 62
40 % 40 440 76
30 % 40 440 86
Entity #39 | Chains: 1h,2h
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 315 34
95 % 33 315 49
90 % 33 319 50
70 % 33 319 60
50 % 41 500 23
40 % 45 661 21
30 % 45 661 34
Entity #4 | Chains: 1E,2E
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 70
95 % 27 186 91
90 % 27 186 97
70 % 27 186 113
50 % 38 421 58
40 % 38 425 67
30 % 38 426 78
Entity #40 | Chains: 1i,2i
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 219 66
95 % 32 315 53
90 % 32 315 58
70 % 32 315 68
50 % 39 486 33
40 % 39 486 45
30 % 41 643 37
Entity #41 | Chains: 1j,2j
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 314 38
95 % 32 314 55
90 % 32 314 60
70 % 32 314 69
50 % 45 502 21
40 % 47 640 23
30 % 47 642 36
Entity #42 | Chains: 1k,2k
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 315 36
95 % 32 315 52
90 % 32 315 57
70 % 32 315 67
50 % 39 495 29
40 % 43 644 22
30 % 43 644 35
Entity #43 | Chains: 1l,2l
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 282 46
95 % 32 322 42
90 % 32 322 48
70 % 40 510 14
50 % 40 513 20
40 % 40 513 34
30 % 40 513 54
Entity #44 | Chains: 1m,2m
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 316 33
95 % 32 316 48
90 % 32 316 54
70 % 32 316 64
50 % 39 499 28
40 % 39 499 39
30 % 41 645 38
Entity #45 | Chains: 1n,2n
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 314 37
95 % 32 314 54
90 % 32 314 59
70 % 32 321 58
50 % 32 332 91
40 % 32 332 108
30 % 32 332 121
Entity #46 | Chains: 1o,2o
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 320 27
95 % 33 323 41
90 % 33 323 46
70 % 33 323 57
50 % 43 507 22
40 % 43 512 33
30 % 43 512 53
Entity #47 | Chains: 1p,2p
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 310 40
95 % 32 315 50
90 % 32 315 55
70 % 32 315 65
50 % 32 327 93
40 % 39 492 43
30 % 39 492 60
Entity #48 | Chains: 1q,2q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 272 48
95 % 32 312 57
90 % 32 312 62
70 % 32 312 73
50 % 32 312 98
40 % 32 312 116
30 % 32 312 129
Entity #49 | Chains: 1r,2r
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 254 55
95 % 30 262 71
90 % 30 262 75
70 % 30 262 87
50 % 30 262 117
40 % 30 262 140
30 % 30 262 154
Entity #5 | Chains: 1F,2F
50S ribosomal protein L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 181 86
95 % 27 187 92
90 % 27 187 98
70 % 27 187 115
50 % 27 216 129
40 % 35 417 69
30 % 35 417 80
Entity #50 | Chains: 1s,2s
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 318 30
95 % 33 318 45
90 % 33 318 51
70 % 40 495 16
50 % 40 501 24
40 % 40 504 35
30 % 40 504 55
Entity #51 | Chains: 1t,2t
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 269 50
95 % 32 314 56
90 % 32 314 61
70 % 32 314 70
50 % 32 314 96
40 % 32 314 113
30 % 32 314 126
Entity #52 | Chains: 1u,2u
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 304 43
95 % 32 304 58
90 % 32 304 63
70 % 32 304 74
50 % 32 304 101
40 % 32 304 119
30 % 32 304 131
Entity #53 | Chains: 1v,2v
mRNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: 1w,2w
A-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #55 | Chains: 1x,2x
P-site tRNA rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: 1y,2y
E-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: 1G,2G
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 189 65
95 % 30 189 82
90 % 30 189 87
70 % 30 213 94
50 % 38 415 53
40 % 38 415 71
30 % 38 415 82
Entity #7 | Chains: 1H,2H
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 72
95 % 27 186 93
90 % 27 186 99
70 % 27 186 116
50 % 28 254 113
40 % 35 420 64
30 % 84 636 40
Entity #8 | Chains: 1I,2I
50S ribosomal protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 153 101
95 % 23 153 125
90 % 23 153 130
70 % 23 153 148
50 % 23 158 174
40 % 31 326 103
30 % 31 329 117
Entity #9 | Chains: 1N,2N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 183 84
95 % 27 183 103
90 % 27 183 108
70 % 27 183 124
50 % 34 388 66
40 % 34 388 87
30 % 34 389 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures