5WIT

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution


Sequence Similarity Clusters for the Entities in PDB 5WIT

Entity #1 | Chains: 1A,2A
23S Ribosomal RNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: 1O,2O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 70
95 % 27 186 89
90 % 27 186 93
70 % 28 251 83
50 % 35 427 38
40 % 84 644 23
30 % 84 644 38
Entity #11 | Chains: 1P,2P
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 74
95 % 27 186 96
90 % 27 186 100
70 % 27 186 116
50 % 34 409 50
40 % 34 409 71
30 % 34 409 84
Entity #12 | Chains: 1Q,2Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 184 81
95 % 27 187 87
90 % 27 187 90
70 % 27 214 95
50 % 34 415 44
40 % 34 415 63
30 % 34 415 78
Entity #13 | Chains: 1R,2R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 191 58
95 % 28 191 74
90 % 28 191 79
70 % 28 191 99
50 % 35 411 39
40 % 35 411 55
30 % 35 413 72
Entity #14 | Chains: 1S,2S
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 75
95 % 27 186 97
90 % 27 186 101
70 % 27 186 117
50 % 34 410 48
40 % 34 410 69
30 % 34 410 83
Entity #15 | Chains: 1T,2T
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 168 94
95 % 27 184 102
90 % 27 184 105
70 % 27 184 120
50 % 34 389 61
40 % 34 389 81
30 % 34 389 93
Entity #16 | Chains: 1U,2U
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 78
95 % 27 186 100
90 % 27 186 104
70 % 27 186 119
50 % 34 414 41
40 % 34 422 53
30 % 34 422 71
Entity #17 | Chains: 1V,2V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 68
95 % 27 186 90
90 % 27 186 94
70 % 27 186 110
50 % 27 236 115
40 % 34 409 72
30 % 34 409 85
Entity #18 | Chains: 1W,2W
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 194 63
95 % 29 195 79
90 % 29 195 84
70 % 29 195 104
50 % 36 384 67
40 % 36 384 85
30 % 36 386 96
Entity #19 | Chains: 1X,2X
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 187 67
95 % 27 187 86
90 % 27 187 89
70 % 27 187 109
50 % 27 245 112
40 % 81 495 39
30 % 81 495 58
Entity #2 | Chains: 1B,2B
5S Ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: 1Y,2Y
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 77
95 % 27 186 99
90 % 27 186 103
70 % 27 186 118
50 % 34 412 47
40 % 34 414 65
30 % 34 414 79
Entity #21 | Chains: 1Z,2Z
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 188 66
95 % 28 188 84
90 % 28 188 88
70 % 28 188 108
50 % 28 188 139
40 % 28 188 154
30 % 28 198 167
Entity #22 | Chains: 10,20
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 182 83
95 % 28 187 83
90 % 28 187 87
70 % 28 187 107
50 % 35 412 45
40 % 35 412 66
30 % 35 412 80
Entity #23 | Chains: 11,21
50S ribosomal protein L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 152 99
95 % 27 178 105
90 % 27 178 109
70 % 27 178 123
50 % 27 178 146
40 % 27 178 161
30 % 27 178 179
Entity #24 | Chains: 12,22
50S ribosomal protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 172 86
95 % 27 180 107
90 % 27 180 111
70 % 27 180 127
50 % 27 180 150
40 % 81 450 50
30 % 81 476 63
Entity #25 | Chains: 13,23
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 193 62
95 % 28 193 80
90 % 28 193 85
70 % 28 193 105
50 % 28 193 137
40 % 35 415 58
30 % 35 415 74
Entity #26 | Chains: 14,24
50S ribosomal protein L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 169 97
95 % 27 169 119
90 % 27 169 123
70 % 27 169 140
50 % 27 252 118
40 % 28 270 132
30 % 28 271 145
Entity #27 | Chains: 15,25
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 170 92
95 % 27 181 106
90 % 27 181 110
70 % 27 181 126
50 % 34 400 60
40 % 34 406 74
30 % 34 406 86
Entity #28 | Chains: 16,26
50S ribosomal protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 167 96
95 % 27 167 116
90 % 27 167 120
70 % 27 167 136
50 % 27 193 149
40 % 34 379 91
30 % 34 379 103
Entity #29 | Chains: 17,27
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 73
95 % 27 186 95
90 % 27 186 99
70 % 27 186 115
50 % 27 186 141
40 % 27 186 157
30 % 27 186 173
Entity #3 | Chains: 1D,2D
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 187 76
95 % 27 187 98
90 % 27 187 102
70 % 27 211 97
50 % 34 416 42
40 % 34 416 61
30 % 34 416 76
Entity #30 | Chains: 18,28
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 187 72
95 % 27 187 94
90 % 27 187 98
70 % 27 187 114
50 % 27 215 129
40 % 34 404 78
30 % 34 404 90
Entity #31 | Chains: 19,29
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 140 113
95 % 26 140 137
90 % 26 140 143
70 % 32 349 49
50 % 32 352 86
40 % 32 352 101
30 % 32 352 116
Entity #32 | Chains: 1a,2a
16S Ribosomal RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 1b,2b
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 315 30
95 % 32 316 44
90 % 32 316 49
70 % 32 316 58
50 % 39 480 34
40 % 39 486 43
30 % 39 486 61
Entity #34 | Chains: 1c,2c
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 262 51
95 % 30 262 64
90 % 30 262 70
70 % 30 262 85
50 % 31 338 89
40 % 31 338 104
30 % 31 338 118
Entity #35 | Chains: 1d,2d
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 316 29
95 % 32 316 43
90 % 32 316 48
70 % 32 316 57
50 % 39 494 26
40 % 39 500 36
30 % 39 500 56
Entity #36 | Chains: 1e,2e
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 315 33
95 % 32 315 48
90 % 32 315 52
70 % 32 315 62
50 % 39 490 30
40 % 39 490 41
30 % 39 492 59
Entity #37 | Chains: 1f,2f
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 320 26
95 % 39 326 36
90 % 39 326 42
70 % 39 326 52
50 % 39 326 91
40 % 39 326 109
30 % 47 430 82
Entity #38 | Chains: 1g,2g
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 320 27
95 % 33 320 40
90 % 33 320 45
70 % 33 320 55
50 % 40 433 51
40 % 40 439 68
30 % 40 439 81
Entity #39 | Chains: 1h,2h
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 315 32
95 % 33 315 46
90 % 33 319 46
70 % 33 319 56
50 % 41 499 23
40 % 45 659 19
30 % 45 659 33
Entity #4 | Chains: 1E,2E
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 69
95 % 27 186 91
90 % 27 186 95
70 % 27 186 111
50 % 38 420 46
40 % 38 424 57
30 % 38 425 73
Entity #40 | Chains: 1i,2i
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 219 65
95 % 32 315 50
90 % 32 315 54
70 % 32 315 64
50 % 39 485 32
40 % 39 485 44
30 % 41 641 36
Entity #41 | Chains: 1j,2j
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 314 36
95 % 32 314 52
90 % 32 314 56
70 % 32 314 65
50 % 45 500 21
40 % 47 637 21
30 % 47 639 35
Entity #42 | Chains: 1k,2k
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 315 34
95 % 32 315 49
90 % 32 315 53
70 % 32 315 63
50 % 39 494 28
40 % 43 642 20
30 % 43 642 34
Entity #43 | Chains: 1l,2l
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 282 46
95 % 32 322 39
90 % 32 322 44
70 % 40 509 14
50 % 40 512 20
40 % 40 512 34
30 % 40 512 53
Entity #44 | Chains: 1m,2m
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 316 31
95 % 32 316 45
90 % 32 316 50
70 % 32 316 59
50 % 39 498 27
40 % 39 498 38
30 % 41 643 37
Entity #45 | Chains: 1n,2n
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 314 35
95 % 32 314 51
90 % 32 314 55
70 % 32 321 54
50 % 32 332 90
40 % 32 332 107
30 % 32 332 120
Entity #46 | Chains: 1o,2o
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 320 25
95 % 33 323 38
90 % 33 323 43
70 % 33 323 53
50 % 43 506 22
40 % 43 511 33
30 % 43 511 52
Entity #47 | Chains: 1p,2p
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 310 38
95 % 32 315 47
90 % 32 315 51
70 % 32 315 61
50 % 32 327 92
40 % 39 491 42
30 % 39 491 60
Entity #48 | Chains: 1q,2q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 272 47
95 % 32 312 54
90 % 32 312 58
70 % 32 312 68
50 % 32 312 98
40 % 32 312 116
30 % 32 312 128
Entity #49 | Chains: 1r,2r
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 254 52
95 % 30 262 65
90 % 30 262 71
70 % 30 262 86
50 % 30 262 114
40 % 30 262 137
30 % 30 262 151
Entity #5 | Chains: 1F,2F
50S ribosomal protein L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 181 84
95 % 27 187 92
90 % 27 187 96
70 % 27 187 112
50 % 27 216 128
40 % 35 416 59
30 % 35 416 75
Entity #50 | Chains: 1s,2s
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 318 28
95 % 33 318 42
90 % 33 318 47
70 % 40 494 16
50 % 40 500 24
40 % 40 503 35
30 % 40 503 55
Entity #51 | Chains: 1t,2t
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 269 48
95 % 32 314 53
90 % 32 314 57
70 % 32 314 66
50 % 32 314 96
40 % 32 314 113
30 % 32 314 125
Entity #52 | Chains: 1u,2u
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 304 41
95 % 32 304 55
90 % 32 304 59
70 % 32 304 71
50 % 32 304 100
40 % 32 304 119
30 % 32 304 130
Entity #53 | Chains: 1v,2v
mRNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: 1w,2w
A-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #55 | Chains: 1x,2x
P-site tRNA rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: 1y,2y
E-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: 1G,2G
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 189 64
95 % 30 189 82
90 % 30 189 86
70 % 30 213 93
50 % 38 414 43
40 % 38 414 62
30 % 38 414 77
Entity #7 | Chains: 1H,2H
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 186 71
95 % 27 186 93
90 % 27 186 97
70 % 27 186 113
50 % 28 254 109
40 % 35 419 54
30 % 84 633 39
Entity #8 | Chains: 1I,2I
50S ribosomal protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 153 98
95 % 23 153 125
90 % 23 153 128
70 % 23 153 146
50 % 23 158 172
40 % 31 325 103
30 % 31 328 117
Entity #9 | Chains: 1N,2N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 183 82
95 % 27 183 103
90 % 27 183 107
70 % 27 183 121
50 % 34 387 62
40 % 34 387 82
30 % 34 388 94

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures