5WF0

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)


Sequence Similarity Clusters for the Entities in PDB 5WF0

Entity #1 | Chains: A
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L13 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 190 129
95 % 90 190 163
90 % 90 190 176
70 % 94 194 191
50 % 120 236 183
40 % 312 438 73
30 % 312 438 77
Entity #11 | Chains: K
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 191 123
95 % 90 191 158
90 % 90 191 172
70 % 94 195 188
50 % 340 478 43
40 % 340 478 51
30 % 340 478 53
Entity #12 | Chains: L
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 190 130
95 % 90 190 164
90 % 90 190 177
70 % 90 190 204
50 % 94 194 220
40 % 334 460 62
30 % 334 460 64
Entity #13 | Chains: M
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 177 161
95 % 87 186 177
90 % 87 186 194
70 % 91 190 202
50 % 332 463 48
40 % 332 463 60
30 % 332 463 62
Entity #14 | Chains: N
50S ribosomal protein L17 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 183 144
95 % 90 189 167
90 % 90 189 179
70 % 94 193 193
50 % 314 423 58
40 % 336 462 54
30 % 336 464 56
Entity #15 | Chains: O
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 187 136
95 % 88 187 174
90 % 88 187 186
70 % 88 187 209
50 % 318 445 56
40 % 318 445 75
30 % 318 445 78
Entity #16 | Chains: P
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 189 133
95 % 90 189 170
90 % 90 189 182
70 % 94 193 194
50 % 125 242 177
40 % 125 242 191
30 % 125 242 202
Entity #17 | Chains: Q
50S ribosomal protein L20 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 190 128
95 % 90 190 162
90 % 90 190 175
70 % 94 194 189
50 % 339 465 44
40 % 340 473 52
30 % 340 473 55
Entity #18 | Chains: R
50S ribosomal protein L21 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 186 140
95 % 90 186 179
90 % 90 186 192
70 % 90 186 213
50 % 94 190 228
40 % 338 460 63
30 % 338 460 65
Entity #19 | Chains: S
50S ribosomal protein L22 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 189 132
95 % 90 189 169
90 % 90 189 180
70 % 90 189 207
50 % 312 434 57
40 % 312 434 76
30 % 312 434 79
Entity #2 | Chains: B
5S rRNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L23 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 193 117
95 % 90 193 152
90 % 90 193 166
70 % 90 193 192
50 % 94 197 213
40 % 336 466 58
30 % 336 466 60
Entity #21 | Chains: U
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 192 121
95 % 90 192 157
90 % 90 192 171
70 % 90 192 198
50 % 310 438 55
40 % 310 438 74
30 % 310 440 76
Entity #22 | Chains: V
50S ribosomal protein L25 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 193 120
95 % 89 193 154
90 % 89 193 168
70 % 89 193 195
50 % 90 194 208
40 % 90 194 225
30 % 90 194 237
Entity #23 | Chains: W
50S ribosomal protein L27 protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 188 137
95 % 90 189 172
90 % 90 189 184
70 % 119 218 172
50 % 334 457 50
40 % 334 457 64
30 % 334 457 66
Entity #24 | Chains: X
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 173 160
95 % 84 173 212
90 % 84 173 224
70 % 88 177 243
50 % 90 179 250
40 % 90 179 264
30 % 90 179 283
Entity #25 | Chains: Y
50S ribosomal protein L29 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 193 118
95 % 90 193 155
90 % 90 193 169
70 % 90 193 196
50 % 94 197 217
40 % 278 391 88
30 % 304 417 84
Entity #26 | Chains: Z
50S ribosomal protein L30 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 190 127
95 % 90 190 161
90 % 90 190 174
70 % 90 190 200
50 % 138 248 174
40 % 333 455 66
30 % 333 455 68
Entity #27 | Chains: 0
50S ribosomal protein L32 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 187 138
95 % 90 187 175
90 % 90 187 188
70 % 90 187 210
50 % 94 191 226
40 % 94 191 236
30 % 334 452 74
Entity #28 | Chains: 1
50S ribosomal protein L33 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 186 141
95 % 87 186 181
90 % 87 186 191
70 % 91 190 203
50 % 115 215 194
40 % 300 421 81
30 % 300 421 86
Entity #29 | Chains: 2
50S ribosomal protein L34 protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 185 143
95 % 90 185 182
90 % 90 185 195
70 % 122 218 171
50 % 338 459 51
40 % 338 459 65
30 % 338 459 67
Entity #3 | Chains: C
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 186 139
95 % 89 186 180
90 % 89 186 193
70 % 93 190 201
50 % 335 465 47
40 % 335 465 59
30 % 335 465 61
Entity #30 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 182 145
95 % 87 182 184
90 % 87 182 196
70 % 87 182 220
50 % 105 208 204
40 % 329 447 71
30 % 329 447 75
Entity #31 | Chains: 4
50S ribosomal protein L36 1 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 180 152
95 % 83 180 194
90 % 83 180 204
70 % 87 184 216
50 % 267 399 77
40 % 267 399 96
30 % 267 399 94
Entity #32 | Chains: 5
50S ribosomal protein L10 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 24 2433
95 % 20 34 2028
90 % 20 34 2072
70 % 20 34 2134
50 % 20 34 2184
40 % 20 34 2228
30 % 21 36 2105
Entity #33 | Chains: 6
50S ribosomal protein L31 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 78 514
95 % 25 78 705
90 % 25 78 742
70 % 25 78 768
50 % 25 78 804
40 % 214 278 130
30 % 215 279 136
Entity #34 | Chains: a
16S rRNA rna, length: 1540 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: b
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 175 159
95 % 85 175 208
90 % 85 175 220
70 % 89 179 231
50 % 409 534 31
40 % 410 540 37
30 % 410 540 41
Entity #36 | Chains: c
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 96 319
95 % 57 96 424
90 % 57 96 444
70 % 61 100 462
50 % 119 171 259
40 % 119 171 275
30 % 120 177 274
Entity #37 | Chains: d
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 179 151
95 % 85 179 195
90 % 85 179 206
70 % 89 183 217
50 % 89 183 231
40 % 411 548 32
30 % 411 548 37
Entity #38 | Chains: e
30S ribosomal protein S5 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 167 162
95 % 85 180 187
90 % 85 180 199
70 % 89 184 214
50 % 407 538 29
40 % 407 538 38
30 % 407 538 42
Entity #39 | Chains: f
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 98 308
95 % 55 95 425
90 % 55 95 446
70 % 59 99 464
50 % 59 99 505
40 % 59 99 532
30 % 59 99 558
Entity #4 | Chains: D
50S ribosomal protein L3 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 198 124
95 % 98 198 159
90 % 98 198 173
70 % 102 202 187
50 % 345 471 46
40 % 346 475 56
30 % 346 476 57
Entity #40 | Chains: g
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 95 328
95 % 87 176 209
90 % 87 176 221
70 % 63 107 447
50 % 392 474 53
40 % 393 480 69
30 % 393 480 71
Entity #41 | Chains: h
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 180 147
95 % 86 180 185
90 % 86 180 198
70 % 86 180 223
50 % 413 547 24
40 % 414 553 30
30 % 530 744 24
Entity #42 | Chains: i
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 178 153
95 % 84 178 201
90 % 84 178 212
70 % 88 182 222
50 % 404 531 32
40 % 404 531 40
30 % 404 531 44
Entity #43 | Chains: j
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 181 146
95 % 88 182 183
90 % 92 186 187
70 % 92 186 211
50 % 413 542 27
40 % 413 542 35
30 % 433 575 33
Entity #44 | Chains: k
30S ribosomal protein S11 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 178 155
95 % 84 178 199
90 % 84 178 211
70 % 84 178 233
50 % 403 536 30
40 % 403 536 39
30 % 403 536 43
Entity #45 | Chains: l
30S ribosomal protein S12 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 154 179
95 % 84 180 192
90 % 84 180 203
70 % 403 540 17
50 % 409 558 22
40 % 409 558 29
30 % 409 558 35
Entity #46 | Chains: m
30S ribosomal protein S13 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 182 149
95 % 87 182 191
90 % 87 182 205
70 % 91 186 215
50 % 409 542 28
40 % 412 545 36
30 % 412 545 40
Entity #47 | Chains: n
30S ribosomal protein S14 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 24 2284
95 % 84 175 207
90 % 84 175 218
70 % 84 175 240
50 % 90 181 237
40 % 91 187 239
30 % 92 188 246
Entity #48 | Chains: o
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 148 185
95 % 86 181 186
90 % 86 181 197
70 % 86 181 225
50 % 417 554 23
40 % 417 554 31
30 % 417 554 36
Entity #49 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 180 156
95 % 88 180 203
90 % 88 180 215
70 % 88 180 237
50 % 92 184 238
40 % 92 184 249
30 % 92 184 267
Entity #5 | Chains: E
50S ribosomal protein L4 protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 189 131
95 % 90 189 168
90 % 90 189 181
70 % 90 189 206
50 % 94 193 222
40 % 336 456 67
30 % 337 457 69
Entity #50 | Chains: q
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 179 150
95 % 85 179 196
90 % 85 179 208
70 % 89 183 219
50 % 89 183 232
40 % 89 183 244
30 % 89 183 259
Entity #51 | Chains: r
30S ribosomal protein S18 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 125 229
95 % 57 129 290
90 % 57 129 306
70 % 59 131 349
50 % 59 131 412
40 % 59 131 431
30 % 59 131 450
Entity #52 | Chains: s
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 176 158
95 % 84 176 204
90 % 84 176 216
70 % 89 182 221
50 % 407 543 26
40 % 407 543 34
30 % 407 543 39
Entity #53 | Chains: t
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 178 154
95 % 85 178 197
90 % 85 178 209
70 % 85 178 234
50 % 89 182 233
40 % 100 206 220
30 % 100 206 231
Entity #54 | Chains: u
30S ribosomal protein S21 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 124 232
95 % 57 124 305
90 % 57 124 320
70 % 59 126 360
50 % 59 126 427
40 % 59 126 445
30 % 59 126 462
Entity #55 | Chains: v,w
tRNA-fMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: x
mRNA rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #57 | Chains: y
Phe-tRNA-Phe rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: z
Elongation factor Tu 2 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 26543
95 % 27 47 976
90 % 27 47 1025
70 % 60 83 463
50 % 62 85 482
40 % 62 85 502
30 % 81 110 429
Entity #6 | Chains: F
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 193 125
95 % 91 193 165
90 % 91 193 178
70 % 91 193 205
50 % 334 460 49
40 % 334 460 61
30 % 334 460 63
Entity #7 | Chains: G
50S ribosomal protein L6 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 188 135
95 % 89 188 173
90 % 89 188 185
70 % 89 188 208
50 % 116 234 184
40 % 333 466 57
30 % 333 466 59
Entity #8 | Chains: H
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 171 163
95 % 76 172 215
90 % 76 172 228
70 % 76 172 252
50 % 77 173 279
40 % 249 351 100
30 % 254 364 95
Entity #9 | Chains: I
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 165 164
95 % 64 165 217
90 % 64 165 229
70 % 68 169 251
50 % 131 265 155
40 % 131 265 169
30 % 133 273 166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures