Sequence Similarity Clusters for the Entities in PDB 5VW1

Entity #1 | Chains: A
CRISPR-associated endonuclease Cas9/Csn1 protein, length: 1370 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 17845
95 % 5 29 1779 Flexibility: High
Max RMSD: 32.8, Avg RMSD: 11.6
PDBFlex
90 % 5 29 1883
70 % 5 29 1861
50 % 5 29 1904
40 % 5 29 1950
30 % 5 29 1985
Entity #2 | Chains: C
sgRNA rna, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B
anti-CRISPR protein AcrIIA4 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 28811
95 % 1 4 21817 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 4 23802
70 % 1 4 21741
50 % 1 4 19192
40 % 1 4 15914
30 % 1 4 14858

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5B2R 2 B CRISPR-associated endonuclease Cas9 1314 3.1 | Details
2 5FQ5 2 B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
3 5B2T 2 B CRISPR-associated endonuclease Cas9 1314 3.1 | Details
4 5B2S 2 B CRISPR-associated endonuclease Cas9 1314 3.1 | Details
5 5VW1 1 A CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
6 4UN4 2 B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
7 4UN5 2 B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
8 5FW1 2 B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
9 4OO8 1 A, D CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
10 5FW2 2 B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
11 4UN3 2 B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
12 5FW3 2 B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
13 6AEG 4 B DNA nuclease 1314 3.1 | Details
14 6AI6 1 A CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
15 4CMP 1 A, B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
16 4ZT0 1 A, C CRISPR-associated endonuclease Cas9 1314 3.1 | Details
17 6AEB 4 B, F DNA Nuclease 1314 3.1 | Details
18 5XBL 1 A CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
19 4ZT9 1 A, C CRISPR-associated endonuclease Cas9 1314 3.1 | Details
20 6IFO 1 A, B CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
21 4CMQ 1 A, B CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 1314 3.1 | Details
22 5F9R 1 B CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
23 6O0X 1 A CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
24 6O0Y 1 A CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
25 6O0Z 1 A CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
26 6MCB 2 A CRISPR-associated endonuclease Cas9 1314 3.1 | Details
27 6MCC 2 A CRISPR-associated endonuclease Cas9 1314 3.1 | Details
28 5Y36 1 A CRISPR-associated endonuclease Cas9/Csn1 1314 3.1 | Details
29 5VZL 2 A CRISPR-associated endonuclease Cas9 1314 3.1 | Details