Sequence Similarity Clusters for the Entities in PDB 5VW1

Entity #1 | Chains: A
CRISPR-associated endonuclease Cas9/Csn1 protein, length: 1370 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 17563
95 % 5 29 1809 Flexibility: High
Max RMSD: 32.8, Avg RMSD: 11.6
PDBFlex
90 % 5 29 1847
70 % 5 29 1888
50 % 5 29 1922
40 % 5 29 1982
30 % 5 29 2007
Entity #2 | Chains: C
sgRNA rna, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B
anti-CRISPR protein AcrIIA4 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 22987
95 % 1 4 20446 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 4 19996
70 % 1 4 18474
50 % 1 4 16423
40 % 1 4 15173
30 % 1 4 13711

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures