5UQ7

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)


Sequence Similarity Clusters for the Entities in PDB 5UQ7

Entity #1 | Chains: A
23S rRNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 72
95 % 167 175 93
90 % 167 175 97
70 % 213 232 84
50 % 291 403 39
40 % 415 609 22
30 % 415 609 38
Entity #11 | Chains: P
50S ribosomal protein L15 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 76
95 % 167 175 100
90 % 167 175 104
70 % 167 175 117
50 % 283 385 54
40 % 283 385 74
30 % 283 385 90
Entity #12 | Chains: Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 173 84
95 % 167 176 92
90 % 167 176 96
70 % 194 203 96
50 % 286 391 48
40 % 286 391 68
30 % 286 391 83
Entity #13 | Chains: R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 180 61
95 % 172 180 81
90 % 172 180 83
70 % 172 180 102
50 % 283 384 45
40 % 286 391 57
30 % 286 393 72
Entity #14 | Chains: S
50S ribosomal protein L18 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 77
95 % 167 175 101
90 % 167 175 105
70 % 167 175 118
50 % 284 386 52
40 % 284 386 73
30 % 284 386 89
Entity #15 | Chains: T
50S ribosomal protein L19 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 157 95
95 % 167 173 106
90 % 167 173 109
70 % 167 173 121
50 % 264 365 67
40 % 264 365 84
30 % 264 365 99
Entity #16 | Chains: U
50S ribosomal protein L20 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 80
95 % 167 175 104
90 % 167 175 108
70 % 167 175 120
50 % 288 390 42
40 % 291 398 56
30 % 291 398 73
Entity #17 | Chains: V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 70
95 % 167 175 94
90 % 167 175 98
70 % 167 175 111
50 % 207 222 119
40 % 287 385 75
30 % 287 385 91
Entity #18 | Chains: W
50S ribosomal protein L22 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 183 65
95 % 174 184 82
90 % 174 184 85
70 % 174 184 103
50 % 261 364 70
40 % 261 364 89
30 % 261 366 104
Entity #19 | Chains: X
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 176 69
95 % 167 176 91
90 % 167 176 95
70 % 167 176 110
50 % 193 202 130
40 % 357 470 45
30 % 357 470 62
Entity #2 | Chains: B
5S rRNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
50S ribosomal protein L24 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 79
95 % 167 175 103
90 % 167 175 107
70 % 167 175 119
50 % 284 388 51
40 % 284 390 70
30 % 284 390 86
Entity #21 | Chains: Z
50S ribosomal protein L25 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 68
95 % 169 177 90
90 % 169 177 93
70 % 169 177 109
50 % 169 177 148
40 % 169 177 161
30 % 179 187 169
Entity #22 | Chains: 0
50S ribosomal protein L27 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 87
95 % 168 176 88
90 % 168 176 91
70 % 168 176 108
50 % 289 388 49
40 % 289 388 71
30 % 289 388 84
Entity #23 | Chains: 1
50S ribosomal protein L28 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 18 1662
95 % 163 167 108
90 % 163 167 113
70 % 163 167 124
50 % 163 167 154
40 % 163 167 168
30 % 163 167 185
Entity #24 | Chains: 2
50S ribosomal protein L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 161 92
95 % 162 169 111
90 % 162 169 116
70 % 162 169 128
50 % 162 169 157
40 % 320 430 52
30 % 346 456 67
Entity #25 | Chains: 3
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 182 64
95 % 172 182 83
90 % 172 182 86
70 % 172 182 104
50 % 172 182 141
40 % 288 391 63
30 % 288 391 78
Entity #26 | Chains: 4
50S ribosomal protein L31 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 158 98
95 % 151 158 124
90 % 151 158 127
70 % 151 158 147
50 % 188 237 122
40 % 196 248 141
30 % 197 249 149
Entity #27 | Chains: 5
50S ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 159 94
95 % 162 170 110
90 % 162 170 115
70 % 162 170 127
50 % 283 381 65
40 % 288 387 72
30 % 288 387 88
Entity #28 | Chains: 6
50S ribosomal protein L33 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 156 97
95 % 148 156 123
90 % 148 156 126
70 % 148 156 144
50 % 160 176 161
40 % 253 355 98
30 % 253 355 112
Entity #29 | Chains: 7
50S ribosomal protein L34 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 75
95 % 167 175 99
90 % 167 175 103
70 % 167 175 116
50 % 167 175 150
40 % 167 175 162
30 % 167 175 177
Entity #3 | Chains: D
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 176 78
95 % 168 176 102
90 % 168 176 106
70 % 192 200 98
50 % 286 392 46
40 % 286 392 66
30 % 286 392 81
Entity #30 | Chains: 8
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 176 74
95 % 168 176 98
90 % 168 176 102
70 % 168 176 115
50 % 196 204 127
40 % 285 380 83
30 % 285 380 95
Entity #31 | Chains: 9
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 127 118
95 % 118 127 149
90 % 118 127 160
70 % 223 326 50
50 % 223 329 88
40 % 223 329 107
30 % 223 329 120
Entity #32 | Chains: a
16S rRNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: b
30S ribosomal protein S2 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 304 32
95 % 281 305 42
90 % 281 305 47
70 % 281 305 58
50 % 359 462 35
40 % 362 468 47
30 % 362 468 65
Entity #34 | Chains: c
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 50 573
95 % 46 50 714
90 % 46 50 744
70 % 46 50 789
50 % 99 134 291
40 % 102 140 300
30 % 102 140 314
Entity #35 | Chains: d
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 282 305 31
95 % 282 305 41
90 % 282 305 46
70 % 282 305 57
50 % 366 472 29
40 % 369 478 40
30 % 369 478 59
Entity #36 | Chains: e
30S ribosomal protein S5 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 282 304 35
95 % 282 304 46
90 % 282 304 50
70 % 282 304 62
50 % 364 473 31
40 % 364 473 42
30 % 364 475 60
Entity #37 | Chains: f
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 284 309 28
95 % 290 315 36
90 % 290 315 40
70 % 290 315 51
50 % 290 315 90
40 % 290 315 111
30 % 350 408 87
Entity #38 | Chains: g
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 309 29
95 % 283 309 39
90 % 283 309 43
70 % 283 309 53
50 % 347 411 53
40 % 350 417 64
30 % 350 417 79
Entity #39 | Chains: h
30S ribosomal protein S8 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 279 304 34
95 % 279 304 44
90 % 283 308 44
70 % 283 308 54
50 % 369 477 27
40 % 441 624 19
30 % 441 624 33
Entity #4 | Chains: E
50S ribosomal protein L3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 71
95 % 167 175 95
90 % 167 175 99
70 % 167 175 112
50 % 293 395 50
40 % 296 399 60
30 % 296 400 75
Entity #40 | Chains: i
30S ribosomal protein S9 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 192 208 67
95 % 281 304 48
90 % 281 304 52
70 % 281 304 64
50 % 361 466 33
40 % 362 467 48
30 % 430 606 36
Entity #41 | Chains: j
30S ribosomal protein S10 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 303 38
95 % 281 303 50
90 % 281 303 54
70 % 281 303 65
50 % 373 478 24
40 % 432 602 21
30 % 434 604 35
Entity #42 | Chains: k
30S ribosomal protein S11 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 304 36
95 % 281 304 47
90 % 281 304 51
70 % 281 304 63
50 % 366 472 32
40 % 436 611 20
30 % 436 611 34
Entity #43 | Chains: l
30S ribosomal protein S12 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 1112
95 % 281 311 38
90 % 281 311 42
70 % 365 486 15
50 % 365 489 22
40 % 365 489 38
30 % 365 489 57
Entity #44 | Chains: m
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 305 33
95 % 281 305 43
90 % 281 305 48
70 % 281 305 59
50 % 369 476 30
40 % 369 476 41
30 % 434 608 37
Entity #45 | Chains: n
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 303 37
95 % 281 303 49
90 % 281 303 53
70 % 285 307 56
50 % 290 316 91
40 % 290 316 112
30 % 290 316 123
Entity #46 | Chains: o
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 309 27
95 % 286 312 37
90 % 286 312 41
70 % 286 312 52
50 % 373 484 25
40 % 375 489 37
30 % 375 489 56
Entity #47 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 299 39
95 % 281 304 45
90 % 281 304 49
70 % 281 304 61
50 % 286 314 93
40 % 367 474 43
30 % 367 474 61
Entity #48 | Chains: q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 272 46
95 % 279 301 52
90 % 279 301 56
70 % 279 301 67
50 % 279 301 96
40 % 279 301 117
30 % 279 301 130
Entity #49 | Chains: r
30S ribosomal protein S18 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 52 534
95 % 47 52 665
90 % 47 52 688
70 % 47 52 735
50 % 47 52 791
40 % 47 52 825
30 % 47 52 832
Entity #5 | Chains: F
50S ribosomal protein L4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 160 93
95 % 168 176 96
90 % 168 176 100
70 % 168 176 113
50 % 197 205 126
40 % 291 392 65
30 % 291 392 80
Entity #50 | Chains: s
30S ribosomal protein S19 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 307 30
95 % 283 307 40
90 % 283 307 45
70 % 283 307 55
50 % 370 478 28
40 % 370 481 39
30 % 370 481 58
Entity #51 | Chains: t
30S ribosomal protein S20 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 242 261 50
95 % 281 303 51
90 % 281 303 55
70 % 281 303 66
50 % 281 303 95
40 % 281 303 116
30 % 281 303 127
Entity #52 | Chains: u
30S ribosomal protein Thx protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 294 44
95 % 272 294 53
90 % 272 294 58
70 % 272 294 72
50 % 272 294 99
40 % 272 294 121
30 % 272 294 132
Entity #53 | Chains: y
P-site tRNA fMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: C
50S ribosomal protein L1 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 52 436
95 % 84 97 278
90 % 84 98 286
70 % 84 98 333
50 % 100 158 234
40 % 100 158 259
30 % 115 215 218
Entity #55 | Chains: z
E-site tRNA Phe rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: x
messenger RNA rna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
50S ribosomal protein L5 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 178 66
95 % 170 178 84
90 % 170 178 88
70 % 194 202 95
50 % 288 390 47
40 % 288 390 67
30 % 288 390 82
Entity #7 | Chains: H
50S ribosomal protein L6 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 175 73
95 % 167 175 97
90 % 167 175 101
70 % 167 175 114
50 % 214 235 112
40 % 288 395 58
30 % 411 598 40
Entity #8 | Chains: I
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 145 102
95 % 143 145 129
90 % 143 145 132
70 % 143 145 152
50 % 148 150 177
40 % 221 308 106
30 % 223 311 118
Entity #9 | Chains: N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 172 85
95 % 164 172 107
90 % 164 172 111
70 % 164 172 123
50 % 261 363 68
40 % 261 363 86
30 % 261 364 103

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures