5UQ7

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)


Sequence Similarity Clusters for the Entities in PDB 5UQ7

Entity #1 | Chains: A
23S rRNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 71
95 % 178 186 90
90 % 178 186 94
70 % 232 251 84
50 % 316 428 38
40 % 453 647 23
30 % 453 647 40
Entity #11 | Chains: P
50S ribosomal protein L15 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 75
95 % 178 186 97
90 % 178 186 102
70 % 178 186 118
50 % 308 410 50
40 % 308 410 71
30 % 308 410 86
Entity #12 | Chains: Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 184 82
95 % 178 187 88
90 % 178 187 91
70 % 205 214 96
50 % 311 416 45
40 % 311 416 64
30 % 311 416 80
Entity #13 | Chains: R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 191 59
95 % 183 191 75
90 % 183 191 80
70 % 183 191 101
50 % 307 412 40
40 % 307 412 56
30 % 307 414 74
Entity #14 | Chains: S
50S ribosomal protein L18 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 76
95 % 178 186 98
90 % 178 186 103
70 % 178 186 119
50 % 309 411 49
40 % 309 411 70
30 % 309 411 85
Entity #15 | Chains: T
50S ribosomal protein L19 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 168 95
95 % 178 184 103
90 % 178 184 107
70 % 178 184 122
50 % 289 390 61
40 % 289 390 81
30 % 289 390 95
Entity #16 | Chains: U
50S ribosomal protein L20 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 79
95 % 178 186 101
90 % 178 186 106
70 % 178 186 121
50 % 313 415 42
40 % 316 423 53
30 % 316 423 73
Entity #17 | Chains: V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 69
95 % 178 186 91
90 % 178 186 95
70 % 178 186 112
50 % 221 236 117
40 % 312 410 72
30 % 312 410 87
Entity #18 | Chains: W
50S ribosomal protein L22 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 194 64
95 % 185 195 80
90 % 185 195 85
70 % 185 195 106
50 % 282 385 67
40 % 282 385 86
30 % 282 387 97
Entity #19 | Chains: X
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 187 68
95 % 178 187 87
90 % 178 187 90
70 % 178 187 111
50 % 229 245 114
40 % 383 496 40
30 % 383 496 60
Entity #2 | Chains: B
5S rRNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
50S ribosomal protein L24 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 78
95 % 178 186 100
90 % 178 186 105
70 % 178 186 120
50 % 309 413 48
40 % 309 415 65
30 % 309 415 81
Entity #21 | Chains: Z
50S ribosomal protein L25 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 188 67
95 % 180 188 85
90 % 180 188 89
70 % 180 188 110
50 % 180 188 141
40 % 180 188 157
30 % 190 198 168
Entity #22 | Chains: 0
50S ribosomal protein L27 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 182 84
95 % 179 187 84
90 % 179 187 88
70 % 179 187 109
50 % 314 413 46
40 % 314 413 66
30 % 314 413 82
Entity #23 | Chains: 1
50S ribosomal protein L28 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 21 1431
95 % 174 178 106
90 % 174 178 110
70 % 174 178 126
50 % 174 178 149
40 % 174 178 163
30 % 174 178 181
Entity #24 | Chains: 2
50S ribosomal protein L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 172 87
95 % 173 180 108
90 % 173 180 112
70 % 173 180 129
50 % 173 180 152
40 % 341 451 51
30 % 367 477 65
Entity #25 | Chains: 3
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 193 63
95 % 183 193 81
90 % 183 193 86
70 % 183 193 107
50 % 183 193 139
40 % 313 416 60
30 % 313 416 76
Entity #26 | Chains: 4
50S ribosomal protein L31 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 169 98
95 % 162 169 121
90 % 162 169 126
70 % 162 169 143
50 % 204 253 120
40 % 219 271 135
30 % 220 272 146
Entity #27 | Chains: 5
50S ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 170 94
95 % 173 181 107
90 % 173 181 111
70 % 173 181 128
50 % 303 401 60
40 % 308 407 73
30 % 308 407 88
Entity #28 | Chains: 6
50S ribosomal protein L33 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 167 97
95 % 159 167 118
90 % 159 167 123
70 % 159 167 139
50 % 177 193 151
40 % 278 380 92
30 % 278 380 103
Entity #29 | Chains: 7
50S ribosomal protein L34 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 74
95 % 178 186 96
90 % 178 186 101
70 % 178 186 117
50 % 178 186 143
40 % 178 186 159
30 % 178 186 174
Entity #3 | Chains: D
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 187 77
95 % 179 187 99
90 % 179 187 104
70 % 203 211 98
50 % 311 417 43
40 % 311 417 62
30 % 311 417 78
Entity #30 | Chains: 8
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 187 73
95 % 179 187 95
90 % 179 187 100
70 % 179 187 116
50 % 207 215 130
40 % 310 405 78
30 % 310 405 90
Entity #31 | Chains: 9
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 140 115
95 % 131 140 138
90 % 131 140 145
70 % 247 350 50
50 % 247 353 86
40 % 247 353 101
30 % 247 353 116
Entity #32 | Chains: a
16S rRNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: b
30S ribosomal protein S2 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 315 29
95 % 292 316 45
90 % 292 316 50
70 % 292 316 59
50 % 378 481 34
40 % 381 487 43
30 % 381 487 63
Entity #34 | Chains: c
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 53 558
95 % 49 53 685
90 % 49 53 707
70 % 49 53 755
50 % 110 145 277
40 % 113 151 295
30 % 113 151 305
Entity #35 | Chains: d
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 316 28
95 % 293 316 44
90 % 293 316 49
70 % 293 316 58
50 % 389 495 27
40 % 392 501 36
30 % 392 501 58
Entity #36 | Chains: e
30S ribosomal protein S5 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 315 32
95 % 293 315 49
90 % 293 315 53
70 % 293 315 63
50 % 382 491 30
40 % 382 491 41
30 % 382 493 61
Entity #37 | Chains: f
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 295 320 25
95 % 301 326 38
90 % 301 326 43
70 % 301 326 53
50 % 301 326 91
40 % 301 326 109
30 % 373 431 84
Entity #38 | Chains: g
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 320 26
95 % 294 320 41
90 % 294 320 46
70 % 294 320 56
50 % 370 434 52
40 % 373 440 68
30 % 373 440 83
Entity #39 | Chains: h
30S ribosomal protein S8 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 290 315 31
95 % 290 315 47
90 % 294 319 47
70 % 294 319 57
50 % 392 500 23
40 % 478 661 20
30 % 478 661 35
Entity #4 | Chains: E
50S ribosomal protein L3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 70
95 % 178 186 92
90 % 178 186 96
70 % 178 186 113
50 % 319 421 47
40 % 322 425 58
30 % 322 426 75
Entity #40 | Chains: i
30S ribosomal protein S9 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 219 66
95 % 292 315 51
90 % 292 315 55
70 % 292 315 65
50 % 381 486 32
40 % 381 486 44
30 % 467 643 38
Entity #41 | Chains: j
30S ribosomal protein S10 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 314 35
95 % 292 314 53
90 % 292 314 57
70 % 292 314 66
50 % 396 501 21
40 % 469 639 22
30 % 471 641 37
Entity #42 | Chains: k
30S ribosomal protein S11 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 315 33
95 % 292 315 50
90 % 292 315 54
70 % 292 315 64
50 % 389 495 29
40 % 469 644 21
30 % 469 644 36
Entity #43 | Chains: l
30S ribosomal protein S12 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 32 1029
95 % 292 322 40
90 % 292 322 45
70 % 389 510 14
50 % 389 513 20
40 % 389 513 34
30 % 389 513 56
Entity #44 | Chains: m
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 316 30
95 % 292 316 46
90 % 292 316 51
70 % 292 316 60
50 % 392 499 28
40 % 392 499 39
30 % 471 645 39
Entity #45 | Chains: n
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 314 34
95 % 292 314 52
90 % 292 314 56
70 % 299 321 55
50 % 306 332 90
40 % 306 332 107
30 % 306 332 120
Entity #46 | Chains: o
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 320 24
95 % 297 323 39
90 % 297 323 44
70 % 297 323 54
50 % 396 507 22
40 % 398 512 33
30 % 398 512 55
Entity #47 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 310 37
95 % 292 315 48
90 % 292 315 52
70 % 292 315 62
50 % 299 327 92
40 % 385 492 42
30 % 385 492 62
Entity #48 | Chains: q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 272 47
95 % 290 312 55
90 % 290 312 59
70 % 290 312 69
50 % 290 312 98
40 % 290 312 116
30 % 290 312 128
Entity #49 | Chains: r
30S ribosomal protein S18 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 52 570
95 % 47 52 701
90 % 47 52 725
70 % 47 52 771
50 % 47 52 821
40 % 47 52 856
30 % 47 52 862
Entity #5 | Chains: F
50S ribosomal protein L4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 181 86
95 % 179 187 93
90 % 179 187 97
70 % 179 187 114
50 % 208 216 129
40 % 316 417 61
30 % 316 417 77
Entity #50 | Chains: s
30S ribosomal protein S19 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 318 27
95 % 294 318 43
90 % 294 318 48
70 % 390 495 15
50 % 393 501 24
40 % 393 504 35
30 % 393 504 57
Entity #51 | Chains: t
30S ribosomal protein S20 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 250 269 49
95 % 292 314 54
90 % 292 314 58
70 % 292 314 67
50 % 292 314 96
40 % 292 314 113
30 % 292 314 125
Entity #52 | Chains: u
30S ribosomal protein Thx protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 282 304 41
95 % 282 304 56
90 % 282 304 60
70 % 282 304 71
50 % 282 304 101
40 % 282 304 119
30 % 282 304 129
Entity #53 | Chains: y
P-site tRNA fMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: C
50S ribosomal protein L1 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 52 462
95 % 84 97 291
90 % 84 98 297
70 % 84 98 346
50 % 101 159 248
40 % 101 159 277
30 % 126 226 221
Entity #55 | Chains: z
E-site tRNA Phe rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: x
messenger RNA rna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
50S ribosomal protein L5 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 189 65
95 % 181 189 83
90 % 181 189 87
70 % 205 213 94
50 % 313 415 44
40 % 313 415 63
30 % 313 415 79
Entity #7 | Chains: H
50S ribosomal protein L6 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 186 72
95 % 178 186 94
90 % 178 186 98
70 % 178 186 115
50 % 233 254 113
40 % 313 420 55
30 % 449 636 41
Entity #8 | Chains: I
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 153 100
95 % 151 153 126
90 % 151 153 130
70 % 151 153 148
50 % 156 158 174
40 % 239 326 103
30 % 241 329 117
Entity #9 | Chains: N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 183 83
95 % 175 183 104
90 % 175 183 108
70 % 175 183 124
50 % 286 388 63
40 % 286 388 82
30 % 286 389 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures