5UQ7

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)


Sequence Similarity Clusters for the Entities in PDB 5UQ7

Entity #1 | Chains: A
23S rRNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 72
95 % 163 171 93
90 % 163 171 96
70 % 209 228 85
50 % 276 388 42
40 % 397 591 21
30 % 397 591 37
Entity #11 | Chains: P
50S ribosomal protein L15 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 76
95 % 163 171 100
90 % 163 171 103
70 % 163 171 117
50 % 268 370 57
40 % 268 370 75
30 % 268 370 92
Entity #12 | Chains: Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 169 85
95 % 163 172 92
90 % 163 172 95
70 % 190 199 98
50 % 275 380 45
40 % 275 380 63
30 % 275 380 77
Entity #13 | Chains: R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 176 62
95 % 168 176 80
90 % 168 176 83
70 % 168 176 101
50 % 268 369 49
40 % 271 376 59
30 % 271 378 74
Entity #14 | Chains: S
50S ribosomal protein L18 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 77
95 % 163 171 101
90 % 163 171 104
70 % 163 171 118
50 % 271 373 53
40 % 271 373 73
30 % 271 373 89
Entity #15 | Chains: T
50S ribosomal protein L19 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 153 94
95 % 163 169 105
90 % 163 169 108
70 % 163 169 121
50 % 249 350 69
40 % 249 350 89
30 % 249 350 103
Entity #16 | Chains: U
50S ribosomal protein L20 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 80
95 % 163 171 104
90 % 163 171 107
70 % 163 171 120
50 % 273 375 47
40 % 276 383 57
30 % 276 383 75
Entity #17 | Chains: V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 70
95 % 163 171 94
90 % 163 171 97
70 % 163 171 110
50 % 203 218 120
40 % 272 370 76
30 % 272 370 93
Entity #18 | Chains: W
50S ribosomal protein L22 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 179 64
95 % 170 180 83
90 % 170 180 86
70 % 170 180 104
50 % 246 349 74
40 % 246 349 96
30 % 246 351 106
Entity #19 | Chains: X
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 172 69
95 % 163 172 91
90 % 163 172 94
70 % 163 172 109
50 % 189 198 130
40 % 342 455 46
30 % 342 455 63
Entity #2 | Chains: B
5S rRNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
50S ribosomal protein L24 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 79
95 % 163 171 103
90 % 163 171 106
70 % 163 171 119
50 % 269 373 52
40 % 269 375 72
30 % 269 375 88
Entity #21 | Chains: Z
50S ribosomal protein L25 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 165 173 68
95 % 165 173 90
90 % 165 173 93
70 % 165 173 108
50 % 165 173 146
40 % 165 173 161
30 % 175 183 170
Entity #22 | Chains: 0
50S ribosomal protein L27 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 167 87
95 % 164 172 88
90 % 164 172 91
70 % 164 172 107
50 % 276 375 50
40 % 276 375 69
30 % 276 375 83
Entity #23 | Chains: 1
50S ribosomal protein L28 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 18 1624
95 % 160 164 107
90 % 160 164 112
70 % 160 164 125
50 % 160 164 153
40 % 160 164 168
30 % 160 164 186
Entity #24 | Chains: 2
50S ribosomal protein L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 155 158 90
95 % 158 165 109
90 % 158 165 114
70 % 158 165 127
50 % 158 165 157
40 % 305 415 52
30 % 331 441 66
Entity #25 | Chains: 3
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 178 63
95 % 168 178 84
90 % 168 178 88
70 % 168 178 105
50 % 168 178 145
40 % 273 376 70
30 % 273 376 85
Entity #26 | Chains: 4
50S ribosomal protein L31 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 154 98
95 % 147 154 127
90 % 147 154 130
70 % 147 154 148
50 % 183 232 122
40 % 191 243 140
30 % 192 244 150
Entity #27 | Chains: 5
50S ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 155 93
95 % 158 166 108
90 % 158 166 113
70 % 158 166 126
50 % 268 366 65
40 % 273 372 74
30 % 273 372 91
Entity #28 | Chains: 6
50S ribosomal protein L33 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 154 95
95 % 146 154 122
90 % 146 154 125
70 % 146 154 143
50 % 158 174 159
40 % 243 345 98
30 % 243 345 112
Entity #29 | Chains: 7
50S ribosomal protein L34 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 75
95 % 163 171 99
90 % 163 171 102
70 % 163 171 116
50 % 163 171 148
40 % 163 171 162
30 % 163 171 179
Entity #3 | Chains: D
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 172 78
95 % 164 172 102
90 % 164 172 105
70 % 188 196 99
50 % 273 379 46
40 % 273 379 66
30 % 273 379 80
Entity #30 | Chains: 8
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 172 74
95 % 164 172 98
90 % 164 172 101
70 % 164 172 114
50 % 192 200 129
40 % 273 368 81
30 % 273 368 97
Entity #31 | Chains: 9
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 126 116
95 % 117 126 144
90 % 117 126 156
70 % 217 320 49
50 % 217 323 88
40 % 217 323 107
30 % 217 323 121
Entity #32 | Chains: a
16S rRNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: b
30S ribosomal protein S2 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 295 33
95 % 272 296 41
90 % 272 296 46
70 % 272 296 58
50 % 345 448 36
40 % 348 454 47
30 % 348 454 64
Entity #34 | Chains: c
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 47 601
95 % 43 47 738
90 % 43 47 762
70 % 43 47 811
50 % 92 127 303
40 % 95 133 313
30 % 95 133 323
Entity #35 | Chains: d
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 296 32
95 % 273 296 40
90 % 273 296 45
70 % 273 296 57
50 % 352 458 29
40 % 355 464 42
30 % 355 464 60
Entity #36 | Chains: e
30S ribosomal protein S5 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 295 36
95 % 273 295 45
90 % 273 295 49
70 % 273 295 61
50 % 350 459 31
40 % 350 459 44
30 % 350 461 61
Entity #37 | Chains: f
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 275 300 28
95 % 281 306 35
90 % 281 306 39
70 % 281 306 50
50 % 281 306 90
40 % 281 306 112
30 % 337 395 86
Entity #38 | Chains: g
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 274 300 29
95 % 274 300 38
90 % 274 300 42
70 % 274 300 52
50 % 333 397 55
40 % 336 403 68
30 % 336 403 82
Entity #39 | Chains: h
30S ribosomal protein S8 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 295 35
95 % 270 295 43
90 % 274 299 43
70 % 274 299 53
50 % 355 463 27
40 % 424 607 18
30 % 424 607 32
Entity #4 | Chains: E
50S ribosomal protein L3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 71
95 % 163 171 95
90 % 163 171 98
70 % 163 171 111
50 % 278 380 51
40 % 281 384 65
30 % 281 385 78
Entity #40 | Chains: i
30S ribosomal protein S9 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 199 82
95 % 272 295 47
90 % 272 295 51
70 % 272 295 63
50 % 347 452 34
40 % 348 453 48
30 % 413 589 35
Entity #41 | Chains: j
30S ribosomal protein S10 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 294 40
95 % 272 294 49
90 % 272 294 53
70 % 272 294 64
50 % 359 464 25
40 % 415 585 20
30 % 417 587 34
Entity #42 | Chains: k
30S ribosomal protein S11 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 295 37
95 % 272 295 46
90 % 272 295 50
70 % 272 295 62
50 % 352 458 32
40 % 419 594 19
30 % 419 594 33
Entity #43 | Chains: l
30S ribosomal protein S12 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 31 988
95 % 272 302 37
90 % 272 302 41
70 % 351 472 15
50 % 351 475 24
40 % 351 475 38
30 % 351 475 56
Entity #44 | Chains: m
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 296 34
95 % 272 296 42
90 % 272 296 47
70 % 272 296 59
50 % 355 462 30
40 % 355 462 43
30 % 417 591 36
Entity #45 | Chains: n
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 294 39
95 % 272 294 48
90 % 272 294 52
70 % 276 298 55
50 % 281 307 91
40 % 281 307 113
30 % 281 307 125
Entity #46 | Chains: o
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 274 300 27
95 % 277 303 36
90 % 277 303 40
70 % 277 303 51
50 % 359 470 26
40 % 361 475 37
30 % 361 475 55
Entity #47 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 290 42
95 % 272 295 44
90 % 272 295 48
70 % 272 295 60
50 % 277 305 93
40 % 353 460 45
30 % 353 460 62
Entity #48 | Chains: q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 266 46
95 % 270 292 51
90 % 270 292 55
70 % 270 292 68
50 % 270 292 96
40 % 270 292 118
30 % 270 292 131
Entity #49 | Chains: r
30S ribosomal protein S18 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 48 563
95 % 43 48 699
90 % 43 48 724
70 % 43 48 770
50 % 43 48 839
40 % 43 48 866
30 % 43 48 858
Entity #5 | Chains: F
50S ribosomal protein L4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 156 92
95 % 164 172 96
90 % 164 172 99
70 % 164 172 112
50 % 193 201 128
40 % 276 377 71
30 % 276 377 87
Entity #50 | Chains: s
30S ribosomal protein S19 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 274 298 30
95 % 274 298 39
90 % 274 298 44
70 % 274 298 54
50 % 356 464 28
40 % 356 467 41
30 % 356 467 59
Entity #51 | Chains: t
30S ribosomal protein S20 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 236 255 50
95 % 272 294 50
90 % 272 294 54
70 % 272 294 65
50 % 272 294 94
40 % 272 294 116
30 % 272 294 130
Entity #52 | Chains: u
30S ribosomal protein Thx protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 285 44
95 % 263 285 54
90 % 263 285 59
70 % 263 285 71
50 % 263 285 100
40 % 263 285 122
30 % 263 285 134
Entity #53 | Chains: y
P-site tRNA fMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: C
50S ribosomal protein L1 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 52 420
95 % 82 95 276
90 % 82 96 285
70 % 82 96 330
50 % 97 155 230
40 % 97 155 256
30 % 110 210 218
Entity #55 | Chains: z
E-site tRNA Phe rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: x
messenger RNA rna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
50S ribosomal protein L5 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 174 66
95 % 166 174 86
90 % 166 174 89
70 % 190 198 96
50 % 275 377 48
40 % 275 377 67
30 % 275 377 81
Entity #7 | Chains: H
50S ribosomal protein L6 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 171 73
95 % 163 171 97
90 % 163 171 100
70 % 163 171 113
50 % 210 231 114
40 % 274 381 61
30 % 394 581 40
Entity #8 | Chains: I
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 142 101
95 % 140 142 129
90 % 140 142 132
70 % 140 142 154
50 % 145 147 181
40 % 213 300 109
30 % 215 303 122
Entity #9 | Chains: N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 168 86
95 % 160 168 106
90 % 160 168 111
70 % 160 168 124
50 % 246 348 72
40 % 246 348 94
30 % 246 349 105

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures