5UQ7

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)


Sequence Similarity Clusters for the Entities in PDB 5UQ7

Entity #1 | Chains: A
23S rRNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 72
95 % 169 177 93
90 % 169 177 98
70 % 222 241 83
50 % 303 415 38
40 % 431 625 23
30 % 431 625 39
Entity #11 | Chains: P
50S ribosomal protein L15 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 76
95 % 169 177 100
90 % 169 177 105
70 % 169 177 119
50 % 295 397 58
40 % 295 397 74
30 % 295 397 90
Entity #12 | Chains: Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 175 83
95 % 169 178 91
90 % 169 178 96
70 % 196 205 96
50 % 298 403 45
40 % 298 403 66
30 % 298 403 81
Entity #13 | Chains: R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 182 63
95 % 174 182 82
90 % 174 182 85
70 % 174 182 104
50 % 294 399 41
40 % 294 399 58
30 % 294 401 72
Entity #14 | Chains: S
50S ribosomal protein L18 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 77
95 % 169 177 101
90 % 169 177 106
70 % 169 177 120
50 % 296 398 53
40 % 296 398 71
30 % 296 398 86
Entity #15 | Chains: T
50S ribosomal protein L19 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 159 95
95 % 169 175 105
90 % 169 175 110
70 % 169 175 123
50 % 276 377 66
40 % 276 377 84
30 % 276 377 97
Entity #16 | Chains: U
50S ribosomal protein L20 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 80
95 % 169 177 104
90 % 169 177 109
70 % 169 177 122
50 % 300 402 42
40 % 303 410 55
30 % 303 410 71
Entity #17 | Chains: V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 70
95 % 169 177 94
90 % 169 177 99
70 % 169 177 113
50 % 211 226 120
40 % 299 397 75
30 % 299 397 91
Entity #18 | Chains: W
50S ribosomal protein L22 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 185 65
95 % 176 186 83
90 % 176 186 87
70 % 176 186 105
50 % 269 372 70
40 % 269 372 88
30 % 269 374 101
Entity #19 | Chains: X
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 178 69
95 % 169 178 90
90 % 169 178 95
70 % 169 178 111
50 % 219 235 114
40 % 369 482 42
30 % 369 482 61
Entity #2 | Chains: B
5S rRNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
50S ribosomal protein L24 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 79
95 % 169 177 103
90 % 169 177 108
70 % 169 177 121
50 % 296 400 49
40 % 296 402 67
30 % 296 402 82
Entity #21 | Chains: Z
50S ribosomal protein L25 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 179 68
95 % 171 179 88
90 % 171 179 94
70 % 171 179 110
50 % 171 179 148
40 % 171 179 159
30 % 181 189 173
Entity #22 | Chains: 0
50S ribosomal protein L27 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 165 173 85
95 % 170 178 86
90 % 170 178 91
70 % 170 178 108
50 % 301 400 47
40 % 301 400 68
30 % 301 400 83
Entity #23 | Chains: 1
50S ribosomal protein L28 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 18 1690
95 % 165 169 108
90 % 165 169 113
70 % 165 169 127
50 % 165 169 155
40 % 165 169 168
30 % 165 169 182
Entity #24 | Chains: 2
50S ribosomal protein L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 163 92
95 % 164 171 111
90 % 164 171 116
70 % 164 171 130
50 % 164 171 159
40 % 328 438 52
30 % 354 464 67
Entity #25 | Chains: 3
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 184 64
95 % 174 184 84
90 % 174 184 88
70 % 174 184 106
50 % 174 184 144
40 % 300 403 61
30 % 300 403 76
Entity #26 | Chains: 4
50S ribosomal protein L31 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 160 98
95 % 153 160 125
90 % 153 160 129
70 % 153 160 147
50 % 194 243 122
40 % 208 260 137
30 % 209 261 149
Entity #27 | Chains: 5
50S ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 161 94
95 % 164 172 110
90 % 164 172 115
70 % 164 172 129
50 % 290 388 64
40 % 295 394 78
30 % 295 394 93
Entity #28 | Chains: 6
50S ribosomal protein L33 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 158 97
95 % 150 158 123
90 % 150 158 127
70 % 150 158 145
50 % 167 183 160
40 % 265 367 96
30 % 265 367 108
Entity #29 | Chains: 7
50S ribosomal protein L34 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 75
95 % 169 177 99
90 % 169 177 104
70 % 169 177 118
50 % 169 177 150
40 % 169 177 163
30 % 169 177 180
Entity #3 | Chains: D
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 178 78
95 % 170 178 102
90 % 170 178 107
70 % 194 202 98
50 % 298 404 43
40 % 298 404 64
30 % 298 404 79
Entity #30 | Chains: 8
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 178 74
95 % 170 178 98
90 % 170 178 103
70 % 170 178 117
50 % 198 206 128
40 % 297 392 80
30 % 297 392 94
Entity #31 | Chains: 9
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 134 116
95 % 125 134 146
90 % 125 134 155
70 % 235 338 50
50 % 235 341 88
40 % 235 341 105
30 % 235 341 118
Entity #32 | Chains: a
16S rRNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: b
30S ribosomal protein S2 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 306 32
95 % 283 307 44
90 % 283 307 49
70 % 283 307 60
50 % 367 470 34
40 % 370 476 46
30 % 370 476 64
Entity #34 | Chains: c
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 50 581
95 % 46 50 723
90 % 46 50 755
70 % 46 50 797
50 % 105 140 279
40 % 108 146 294
30 % 108 146 309
Entity #35 | Chains: d
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 284 307 31
95 % 284 307 43
90 % 284 307 48
70 % 284 307 59
50 % 378 484 29
40 % 381 490 39
30 % 381 490 59
Entity #36 | Chains: e
30S ribosomal protein S5 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 284 306 35
95 % 284 306 48
90 % 284 306 52
70 % 284 306 63
50 % 371 480 32
40 % 371 480 44
30 % 371 482 60
Entity #37 | Chains: f
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 286 311 27
95 % 292 317 36
90 % 292 317 41
70 % 292 317 54
50 % 292 317 95
40 % 292 317 113
30 % 362 420 84
Entity #38 | Chains: g
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 285 311 28
95 % 285 311 40
90 % 285 311 45
70 % 285 311 57
50 % 359 423 56
40 % 362 429 62
30 % 362 429 77
Entity #39 | Chains: h
30S ribosomal protein S8 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 306 34
95 % 281 306 46
90 % 285 310 46
70 % 285 310 58
50 % 381 489 27
40 % 457 640 19
30 % 457 640 33
Entity #4 | Chains: E
50S ribosomal protein L3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 71
95 % 169 177 95
90 % 169 177 100
70 % 169 177 114
50 % 305 407 48
40 % 308 411 59
30 % 308 412 74
Entity #40 | Chains: i
30S ribosomal protein S9 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 194 210 67
95 % 283 306 50
90 % 283 306 54
70 % 283 306 65
50 % 370 475 33
40 % 370 475 47
30 % 446 622 37
Entity #41 | Chains: j
30S ribosomal protein S10 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 305 38
95 % 283 305 52
90 % 283 305 56
70 % 283 305 66
50 % 385 490 23
40 % 448 618 22
30 % 450 620 35
Entity #42 | Chains: k
30S ribosomal protein S11 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 306 36
95 % 283 306 49
90 % 283 306 53
70 % 283 306 64
50 % 378 484 31
40 % 448 623 21
30 % 448 623 34
Entity #43 | Chains: l
30S ribosomal protein S12 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 1138
95 % 283 313 39
90 % 283 313 44
70 % 377 498 15
50 % 377 501 21
40 % 377 501 35
30 % 377 501 57
Entity #44 | Chains: m
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 307 33
95 % 283 307 45
90 % 283 307 50
70 % 283 307 61
50 % 381 488 30
40 % 381 488 41
30 % 450 624 38
Entity #45 | Chains: n
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 305 37
95 % 283 305 51
90 % 283 305 55
70 % 290 312 56
50 % 297 323 92
40 % 297 323 109
30 % 297 323 122
Entity #46 | Chains: o
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 285 311 26
95 % 288 314 38
90 % 288 314 43
70 % 288 314 55
50 % 385 496 24
40 % 387 501 34
30 % 387 501 56
Entity #47 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 301 40
95 % 283 306 47
90 % 283 306 51
70 % 283 306 62
50 % 290 318 96
40 % 374 481 45
30 % 374 481 63
Entity #48 | Chains: q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 274 46
95 % 281 303 54
90 % 281 303 58
70 % 281 303 69
50 % 281 303 99
40 % 281 303 117
30 % 281 303 128
Entity #49 | Chains: r
30S ribosomal protein S18 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 52 539
95 % 47 52 676
90 % 47 52 700
70 % 47 52 746
50 % 47 52 803
40 % 47 52 833
30 % 47 52 844
Entity #5 | Chains: F
50S ribosomal protein L4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 162 93
95 % 170 178 96
90 % 170 178 101
70 % 170 178 115
50 % 199 207 127
40 % 303 404 63
30 % 303 404 78
Entity #50 | Chains: s
30S ribosomal protein S19 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 285 309 29
95 % 285 309 41
90 % 285 309 47
70 % 379 484 16
50 % 382 490 28
40 % 382 493 37
30 % 382 493 58
Entity #51 | Chains: t
30S ribosomal protein S20 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 244 263 50
95 % 283 305 53
90 % 283 305 57
70 % 283 305 67
50 % 283 305 98
40 % 283 305 116
30 % 283 305 127
Entity #52 | Chains: u
30S ribosomal protein Thx protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 273 295 44
95 % 273 295 55
90 % 273 295 60
70 % 273 295 71
50 % 273 295 100
40 % 273 295 121
30 % 273 295 133
Entity #53 | Chains: y
P-site tRNA fMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: C
50S ribosomal protein L1 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 52 444
95 % 84 97 283
90 % 84 98 290
70 % 84 98 338
50 % 101 159 237
40 % 101 159 265
30 % 120 220 219
Entity #55 | Chains: z
E-site tRNA Phe rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: x
messenger RNA rna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
50S ribosomal protein L5 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 180 66
95 % 172 180 85
90 % 172 180 89
70 % 196 204 95
50 % 300 402 44
40 % 300 402 65
30 % 300 402 80
Entity #7 | Chains: H
50S ribosomal protein L6 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 177 73
95 % 169 177 97
90 % 169 177 102
70 % 169 177 116
50 % 223 244 112
40 % 300 407 57
30 % 427 614 41
Entity #8 | Chains: I
50S ribosomal protein L9 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 145 147 101
95 % 145 147 128
90 % 145 147 130
70 % 145 147 151
50 % 150 152 176
40 % 231 318 106
30 % 233 321 117
Entity #9 | Chains: N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 174 84
95 % 166 174 107
90 % 166 174 112
70 % 166 174 125
50 % 273 375 69
40 % 273 375 87
30 % 273 376 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures