Sequence Similarity Clusters for the Entities in PDB 5T4O

Entity #1 | Chains: A,B,C
ATP synthase subunit alpha protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 2884
95 % 2 4 3211
90 % 2 4 3269
70 % 2 4 3256
50 % 61 77 178
40 % 61 77 190
30 % 61 77 212
Entity #2 | Chains: D,E,F
ATP synthase subunit beta protein, length: 471 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8448
95 % 2 4 3240
90 % 2 4 3300
70 % 62 78 152
50 % 63 79 176
40 % 63 79 189
30 % 63 79 210
Entity #3 | Chains: G
ATP synthase gamma chain protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30012
95 % 2 4 11528
90 % 2 4 11359
70 % 2 4 10749
50 % 2 4 9645
40 % 53 68 668
30 % 53 68 669
Entity #4 | Chains: H
ATP synthase epsilon chain protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 6195
95 % 4 9 6337
90 % 4 9 6321
70 % 4 9 6219
50 % 4 9 5817
40 % 4 9 5432
30 % 14 21 2267
Entity #5 | Chains: I,J
ATP synthase subunit b protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 15067
95 % 1 3 13028
90 % 1 3 13875
70 % 1 3 12990
50 % 1 3 11510
40 % 1 3 10330
30 % 1 3 8804
Entity #6 | Chains: K
ATP synthase subunit a protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30014
95 % 1 3 26230
90 % 1 3 25286
70 % 1 3 22860
50 % 1 3 19638
40 % 1 3 17332
30 % 1 3 13787
Entity #7 | Chains: L
ATP synthase subunit delta protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30013
95 % 1 3 26229
90 % 1 3 25285
70 % 1 3 22859
50 % 1 3 19637
40 % 1 3 17331
30 % 1 3 14552
Entity #8 | Chains: M,N,O,P,Q,R,S,T,U,V
ATP synthase subunit c protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 777
95 % 1 12 947
90 % 1 12 976
70 % 1 12 1002
50 % 1 12 1053
40 % 1 12 1065
30 % 1 12 1051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures