Sequence Similarity Clusters for the Entities in PDB 5T4O

Entity #1 | Chains: A,B,C
ATP synthase subunit alpha protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 2835
95 % 2 4 3201
90 % 2 4 3259
70 % 2 4 3200
50 % 61 77 175
40 % 61 77 189
30 % 61 77 210
Entity #2 | Chains: D,E,F
ATP synthase subunit beta protein, length: 471 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8288
95 % 2 4 3188
90 % 2 4 3246
70 % 62 78 147
50 % 63 79 174
40 % 63 79 188
30 % 63 79 207
Entity #3 | Chains: G
ATP synthase gamma chain protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29514
95 % 2 4 11286
90 % 2 4 11120
70 % 2 4 10536
50 % 2 4 9481
40 % 53 68 662
30 % 53 68 661
Entity #4 | Chains: H
ATP synthase epsilon chain protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 6079
95 % 4 9 6220
90 % 4 9 6282
70 % 4 9 6123
50 % 4 9 5744
40 % 4 9 5369
30 % 12 19 2396
Entity #5 | Chains: I,J
ATP synthase subunit b protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14783
95 % 1 3 12771
90 % 1 3 13613
70 % 1 3 12765
50 % 1 3 11332
40 % 1 3 10185
30 % 1 3 8687
Entity #6 | Chains: K
ATP synthase subunit a protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29516
95 % 1 3 25790
90 % 1 3 24877
70 % 1 3 22515
50 % 1 3 19333
40 % 1 3 17052
30 % 1 3 14312
Entity #7 | Chains: L
ATP synthase subunit delta protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29515
95 % 1 3 25789
90 % 1 3 24876
70 % 1 3 22514
50 % 1 3 19332
40 % 1 3 17051
30 % 1 3 14311
Entity #8 | Chains: M,N,O,P,Q,R,S,T,U,V
ATP synthase subunit c protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 756
95 % 1 12 926
90 % 1 12 961
70 % 1 12 991
50 % 1 12 1034
40 % 1 12 1049
30 % 1 12 1037

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures