Sequence Similarity Clusters for the Entities in PDB 5T4O

Entity #1 | Chains: A,B,C
ATP synthase subunit alpha protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 2955
95 % 2 4 3287
90 % 2 4 3352
70 % 2 4 3324
50 % 62 78 181
40 % 62 78 194
30 % 62 78 216
Entity #2 | Chains: D,E,F
ATP synthase subunit beta protein, length: 471 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8635
95 % 2 4 3316
90 % 2 4 3382
70 % 62 78 154
50 % 64 80 179
40 % 64 80 193
30 % 64 80 215
Entity #3 | Chains: G
ATP synthase gamma chain protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30633
95 % 2 4 11779
90 % 2 4 11585
70 % 2 4 10943
50 % 2 4 9807
40 % 54 69 688
30 % 54 69 696
Entity #4 | Chains: H
ATP synthase epsilon chain protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 6334
95 % 4 9 6555
90 % 4 9 6450
70 % 4 9 6344
50 % 4 9 5913
40 % 4 9 5520
30 % 15 22 2227
Entity #5 | Chains: I,J
ATP synthase subunit b protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 15400
95 % 1 3 13320
90 % 1 3 14177
70 % 1 3 13248
50 % 1 3 11732
40 % 1 3 10528
30 % 1 3 8966
Entity #6 | Chains: K
ATP synthase subunit a protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30635
95 % 1 3 26733
90 % 1 3 25765
70 % 1 3 23269
50 % 1 3 19982
40 % 1 3 17639
30 % 1 3 14019
Entity #7 | Chains: L
ATP synthase subunit delta protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30634
95 % 1 3 26732
90 % 1 3 25764
70 % 1 3 23268
50 % 1 3 19981
40 % 1 3 17638
30 % 1 3 14792
Entity #8 | Chains: M,N,O,P,Q,R,S,T,U,V
ATP synthase subunit c protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 808
95 % 1 12 987
90 % 1 12 1019
70 % 1 12 1045
50 % 1 12 1085
40 % 1 12 1094
30 % 1 12 1076

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures