Sequence Similarity Clusters for the Entities in PDB 5T4O

Entity #1 | Chains: A,B,C
ATP synthase subunit alpha protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 2793
95 % 2 4 3124
90 % 2 4 3178
70 % 2 4 3110
50 % 61 77 172
40 % 61 77 185
30 % 61 77 204
Entity #2 | Chains: D,E,F
ATP synthase subunit beta protein, length: 471 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8104
95 % 2 4 3112
90 % 2 4 3166
70 % 62 78 144
50 % 63 79 170
40 % 63 79 183
30 % 63 79 202
Entity #3 | Chains: G
ATP synthase gamma chain protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28910
95 % 2 4 11094
90 % 2 4 10938
70 % 2 4 10338
50 % 2 4 9303
40 % 53 68 640
30 % 53 68 637
Entity #4 | Chains: H
ATP synthase epsilon chain protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 5495
95 % 4 9 5787
90 % 4 9 5806
70 % 4 9 5677
50 % 4 9 5363
40 % 4 9 5015
30 % 12 19 2348
Entity #5 | Chains: I,J
ATP synthase subunit b protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14481
95 % 1 3 12537
90 % 1 3 13362
70 % 1 3 12525
50 % 1 3 11137
40 % 1 3 10015
30 % 1 3 8547
Entity #6 | Chains: K
ATP synthase subunit a protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28912
95 % 1 3 25269
90 % 1 3 24394
70 % 1 3 22138
50 % 1 3 19017
40 % 1 3 16787
30 % 1 3 14075
Entity #7 | Chains: L
ATP synthase subunit delta protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28911
95 % 1 3 25268
90 % 1 3 24393
70 % 1 3 22137
50 % 1 3 19016
40 % 1 3 16786
30 % 1 3 14074
Entity #8 | Chains: M,N,O,P,Q,R,S,T,U,V
ATP synthase subunit c protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 740
95 % 1 12 904
90 % 1 12 938
70 % 1 12 968
50 % 1 12 1007
40 % 1 12 1028
30 % 1 12 1012

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures