Sequence Similarity Clusters for the Entities in PDB 5O6U

Entity #1 | Chains: A
crRNA rna, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
CRISPR-associated protein, Csy4 family protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32723
95 % 2 2 28356 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 27253
70 % 2 2 24549
50 % 2 2 21069
40 % 2 2 18584
30 % 8 15 3633
Entity #3 | Chains: C,D,E
Uncharacterized protein protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13786
95 % 2 2 13075 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12853
70 % 2 2 12109
50 % 2 2 10786
40 % 2 2 9725
30 % 2 2 8333
Entity #4 | Chains: F
Uncharacterized protein protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37309
95 % 2 2 31798 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 2.4
PDBFlex
90 % 2 2 30454
70 % 2 2 27235
50 % 2 2 23342
40 % 2 2 20568
30 % 2 2 17192
Entity #5 | Chains: H
non-target DNA dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: I
target DNA dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures