Sequence Similarity Clusters for the Entities in PDB 5O6U

Entity #1 | Chains: A
crRNA rna, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
CRISPR-associated protein, Csy4 family protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32073
95 % 2 2 27809 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 26745
70 % 2 2 24126
50 % 2 2 20690
40 % 2 2 18240
30 % 8 14 3830
Entity #3 | Chains: C,D,E
Uncharacterized protein protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13475
95 % 2 2 12774 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12570
70 % 2 2 11874
50 % 2 2 10594
40 % 2 2 9567
30 % 2 2 8216
Entity #4 | Chains: F
Uncharacterized protein protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36586
95 % 2 2 31194 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 2.4
PDBFlex
90 % 2 2 29887
70 % 2 2 26771
50 % 2 2 22935
40 % 2 2 20186
30 % 2 2 16878
Entity #5 | Chains: H
non-target DNA dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: I
target DNA dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures