Sequence Similarity Clusters for the Entities in PDB 5O6U

Entity #1 | Chains: A
crRNA rna, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
CRISPR-associated protein, Csy4 family protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31355
95 % 2 2 27204 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 26197
70 % 2 2 23694
50 % 2 2 20320
40 % 2 2 17923
30 % 8 14 3738
Entity #3 | Chains: C,D,E
Uncharacterized protein protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13169
95 % 2 2 12503 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12312
70 % 2 2 11614
50 % 2 2 10372
40 % 2 2 9372
30 % 2 2 8042
Entity #4 | Chains: F
Uncharacterized protein protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35776
95 % 2 2 30530 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 2.4
PDBFlex
90 % 2 2 29287
70 % 2 2 26303
50 % 2 2 22546
40 % 2 2 19853
30 % 2 2 16591
Entity #5 | Chains: H
non-target DNA dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: I
target DNA dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures