Sequence Similarity Clusters for the Entities in PDB 5KW1

Entity #1 | Chains: A,B
Poly(U)-binding-splicing factor PUF60 protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7653
95 % 3 8 5271 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 8 5303
70 % 3 8 5172
50 % 3 8 4927
40 % 3 8 4630
30 % 3 8 4167
Entity #2 | Chains: C
DNA/RNA (30-MER) hybrid, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures