Sequence Similarity Clusters for the Entities in PDB 5KW1

Entity #1 | Chains: A,B
Poly(U)-binding-splicing factor PUF60 protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7785
95 % 3 8 5348 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 8 5378
70 % 3 8 5243
50 % 3 8 4992
40 % 3 8 4700
30 % 3 8 4228
Entity #2 | Chains: C
DNA/RNA (30-MER) hybrid, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures