Sequence Similarity Clusters for the Entities in PDB 5GMK

Entity #1 | Chains: A
Pre-mRNA-splicing factor 8 protein, length: 2413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 17 3836
95 % 14 18 3893
90 % 14 18 3951
70 % 14 18 3867
50 % 24 30 2193
40 % 24 30 2155
30 % 24 30 2041
Entity #10 | Chains: O
Pre-mRNA-splicing factor PRP46 protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 5599
95 % 11 12 5909
90 % 11 12 5914
70 % 11 12 5764
50 % 11 12 5456
40 % 11 12 5109
30 % 11 12 4567
Entity #11 | Chains: P
Pre-mRNA-processing protein 45 protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 5672
95 % 11 12 5977
90 % 11 12 5978
70 % 11 12 5824
50 % 11 12 5502
40 % 11 12 5141
30 % 11 12 4593
Entity #12 | Chains: Q
Pre-mRNA-splicing factor SLT11 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 5600
95 % 11 12 5910
90 % 11 12 5915
70 % 11 12 5765
50 % 11 12 5457
40 % 11 12 5110
30 % 11 12 4568
Entity #13 | Chains: R
Pre-mRNA-splicing factor CWC2 protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 6778
95 % 11 12 5978
90 % 11 12 5979
70 % 11 12 5825
50 % 11 12 5503
40 % 11 12 5142
30 % 11 12 4594
Entity #14 | Chains: S
Pre-mRNA-splicing factor CWC15 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 10052
95 % 10 11 7033
90 % 10 11 6997
70 % 10 11 6778
50 % 10 11 6284
40 % 10 11 5834
30 % 10 11 5114
Entity #15 | Chains: T
Pre-mRNA-splicing factor BUD31 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 13 5246
95 % 11 13 5561
90 % 11 13 5576
70 % 11 13 5417
50 % 17 20 3467
40 % 17 20 3328
30 % 17 20 3069
Entity #16 | Chains: Z
Pre-mRNA-splicing factor CWC22 protein, length: 577 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8562
95 % 10 11 7032
90 % 10 11 6996
70 % 10 11 6777
50 % 10 11 6283
40 % 10 11 5833
30 % 10 11 5113
Entity #17 | Chains: c
Pre-mRNA-splicing factor CEF1 protein, length: 587 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29542
95 % 2 3 25109
90 % 2 3 24252
70 % 2 3 21967
50 % 11 12 5742
40 % 11 12 5358
30 % 11 12 4753
Entity #18 | Chains: d
Pre-mRNA-splicing factor CLF1 protein, length: 687 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28624
95 % 2 3 25111
90 % 2 3 24254
70 % 1 2 32534
50 % 1 2 27691
40 % 1 2 24295
30 % 1 2 20266
Entity #19 | Chains: F
Protein CWC16 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 16140
95 % 5 5 15042
90 % 5 5 14746
70 % 5 5 13747
50 % 5 5 12159
40 % 5 5 10894
30 % 5 5 9282
Entity #2 | Chains: C
Pre-mRNA-splicing factor SNU114 protein, length: 1008 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 18 3587
95 % 14 18 3892
90 % 14 18 3950
70 % 14 18 3866
50 % 14 18 3761
40 % 14 18 3583
30 % 24 30 2055
Entity #20 | Chains: G
Pre-mRNA-splicing factor CWC25 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26673
95 % 3 3 23552
90 % 3 3 22764
70 % 3 3 20706
50 % 3 3 17709
40 % 3 3 15643
30 % 3 3 13106
Entity #21 | Chains: H
Pre-mRNA-splicing factor ISY1 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 42601
95 % 3 3 24514
90 % 3 3 23664
70 % 3 3 21466
50 % 3 3 18471
40 % 3 3 16334
30 % 3 3 13692
Entity #22 | Chains: I
Pre-mRNA-splicing factor SYF2 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8335
95 % 8 9 8387
90 % 8 9 8302
70 % 8 9 8040
50 % 8 9 7348
40 % 8 9 6770
30 % 8 9 5906
Entity #23 | Chains: v
Pre-mRNA-splicing factor SYF1 protein, length: 859 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30599
95 % 2 3 26712
90 % 2 3 25743
70 % 1 2 26583
50 % 1 2 22785
40 % 1 2 20085
30 % 1 2 16820
Entity #24 | Chains: n
Pre-mRNA-processing factor 17 protein, length: 455 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8334
95 % 8 9 8386
90 % 8 9 8301
70 % 8 9 8039
50 % 8 9 7347
40 % 8 9 6769
30 % 8 9 5905
Entity #25 | Chains: o,p,q,r
Pre-mRNA-processing factor 19 protein, length: 503 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 1413
95 % 8 9 1654
90 % 8 9 1690
70 % 8 9 1705
50 % 8 9 1744
40 % 8 9 1735
30 % 8 9 1698
Entity #26 | Chains: t
Pre-mRNA-splicing factor SNT309 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8876
95 % 8 9 8897
90 % 8 9 8809
70 % 8 9 8488
50 % 8 9 7760
40 % 8 9 7126
30 % 8 9 6227
Entity #27 | Chains: k,s
Small nuclear ribonucleoprotein-associated protein B protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1267
95 % 17 22 1502
90 % 17 22 1526
70 % 17 22 1529
50 % 17 22 1562
40 % 17 22 1552
30 % 17 22 1529
Entity #28 | Chains: i,u
Small nuclear ribonucleoprotein E protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1253
95 % 17 22 1492
90 % 17 22 1518
70 % 17 22 1521
50 % 17 23 1485
40 % 17 23 1471
30 % 17 23 1462
Entity #29 | Chains: h,w
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1238
95 % 19 24 900
90 % 19 24 932
70 % 19 24 970
50 % 19 24 1019
40 % 19 24 1034
30 % 19 24 1023
Entity #3 | Chains: D
U5 snRNA rna, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: j,x
Small nuclear ribonucleoprotein G protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1266
95 % 17 22 1501
90 % 17 22 1525
70 % 17 22 1528
50 % 36 43 496
40 % 36 44 545
30 % 36 44 551
Entity #31 | Chains: l,y
Small nuclear ribonucleoprotein Sm D3 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1252
95 % 17 22 1491
90 % 17 22 1517
70 % 17 22 1520
50 % 17 22 1556
40 % 17 22 1546
30 % 17 22 1525
Entity #32 | Chains: m,z
Small nuclear ribonucleoprotein Sm D1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1254
95 % 17 22 1493
90 % 17 22 1519
70 % 17 22 1522
50 % 17 22 1557
40 % 17 22 1547
30 % 17 22 1526
Entity #33 | Chains: e,g
Small nuclear ribonucleoprotein Sm D2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 21 1312
95 % 17 21 1539
90 % 17 21 1565
70 % 17 21 1569
50 % 38 45 487
40 % 38 45 541
30 % 38 45 544
Entity #34 | Chains: a
U2 small nuclear ribonucleoprotein B'' protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 13 5262
95 % 13 13 5576
90 % 13 13 5591
70 % 13 13 5438
50 % 13 13 5285
40 % 13 13 4952
30 % 13 13 4442
Entity #35 | Chains: b
U2 small nuclear ribonucleoprotein A' protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 13 5414
95 % 13 13 5723
90 % 13 13 5740
70 % 13 13 5586
50 % 13 13 5284
40 % 13 13 4951
30 % 13 13 4362
Entity #4 | Chains: E
U6 snRNA rna, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
U2 snRNA rna, length: 1175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: M
Intron_BPS rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: B
5'-Exon rna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: N
5'-Splicing Site rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: J
Pre-mRNA-splicing factor CWC21 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 7161
95 % 9 10 7301
90 % 9 10 7260
70 % 9 10 7040
50 % 9 10 6513
40 % 9 10 6040
30 % 9 10 5305

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures