Sequence Similarity Clusters for the Entities in PDB 5GMK

Entity #1 | Chains: A
Pre-mRNA-splicing factor 8 protein, length: 2413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 5632
95 % 8 12 5315
90 % 8 12 5339
70 % 8 12 5254
50 % 11 17 3596
40 % 11 17 3464
30 % 11 17 3236
Entity #10 | Chains: O
Pre-mRNA-splicing factor PRP46 protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 10224
95 % 7 8 8493
90 % 7 8 8429
70 % 7 8 8104
50 % 7 8 7437
40 % 7 8 6907
30 % 7 8 6147
Entity #11 | Chains: P
Pre-mRNA-processing protein 45 protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 8282
95 % 7 8 8685
90 % 7 8 8615
70 % 7 8 8293
50 % 7 8 7573
40 % 7 8 7012
30 % 7 8 6230
Entity #12 | Chains: Q
Pre-mRNA-splicing factor SLT11 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 8343
95 % 7 8 8730
90 % 7 8 8658
70 % 7 8 8335
50 % 7 8 7601
40 % 7 8 7036
30 % 7 8 6246
Entity #13 | Chains: R
Pre-mRNA-splicing factor CWC2 protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 10328
95 % 7 8 8834
90 % 7 8 8758
70 % 7 8 8422
50 % 7 8 7676
40 % 7 8 7091
30 % 7 8 6284
Entity #14 | Chains: S
Pre-mRNA-splicing factor CWC15 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 15761
95 % 6 7 10706
90 % 6 7 10557
70 % 6 7 10030
50 % 6 7 9092
40 % 6 7 8317
30 % 6 7 7330
Entity #15 | Chains: T
Pre-mRNA-splicing factor BUD31 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 9 7439
95 % 7 9 7995
90 % 7 9 7939
70 % 7 9 7699
50 % 9 12 5529
40 % 9 12 5196
30 % 9 12 4671
Entity #16 | Chains: Z
Pre-mRNA-splicing factor CWC22 protein, length: 577 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 11280
95 % 7 8 8298
90 % 7 8 8246
70 % 7 8 7957
50 % 7 8 7325
40 % 7 8 6810
30 % 7 8 6073
Entity #17 | Chains: c
Pre-mRNA-splicing factor CEF1 protein, length: 587 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25454
95 % 2 3 21639
90 % 2 3 21028
70 % 2 3 19305
50 % 2 3 16781
40 % 2 3 14985
30 % 2 3 12859
Entity #18 | Chains: d
Pre-mRNA-splicing factor CLF1 protein, length: 687 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25330
95 % 2 3 21557
90 % 2 3 20947
70 % 2 4 14345
50 % 2 4 12722
40 % 2 4 11530
30 % 2 4 10034
Entity #19 | Chains: F
Protein CWC16 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27113
95 % 3 3 22708
90 % 3 3 22048
70 % 3 3 20231
50 % 3 3 17538
40 % 3 3 15643
30 % 3 3 13391
Entity #2 | Chains: C
Pre-mRNA-splicing factor SNU114 protein, length: 1008 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 5974
95 % 8 12 5326
90 % 8 12 5350
70 % 8 12 5264
50 % 8 12 5019
40 % 8 12 4750
30 % 11 17 3237
Entity #20 | Chains: G
Pre-mRNA-splicing factor CWC25 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 28639
95 % 3 3 23798
90 % 3 3 23002
70 % 3 3 20977
50 % 3 3 18154
40 % 3 3 16181
30 % 3 3 13837
Entity #21 | Chains: H
Pre-mRNA-splicing factor ISY1 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39788
95 % 3 3 23109
90 % 3 3 22412
70 % 3 3 20550
50 % 3 3 17796
40 % 3 3 15863
30 % 3 3 13565
Entity #22 | Chains: I
Pre-mRNA-splicing factor SYF2 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 15551
95 % 4 5 14576
90 % 4 5 14326
70 % 4 5 13446
50 % 4 5 11954
40 % 4 5 10825
30 % 4 5 9410
Entity #23 | Chains: v
Pre-mRNA-splicing factor SYF1 protein, length: 859 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25228
95 % 2 3 21494
90 % 2 3 20884
70 % 2 4 14239
50 % 2 4 12632
40 % 2 4 11449
30 % 2 4 9963
Entity #24 | Chains: n
Pre-mRNA-processing factor 17 protein, length: 455 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 14716
95 % 4 5 13918
90 % 4 5 13699
70 % 4 5 12884
50 % 4 5 11485
40 % 4 5 10418
30 % 4 5 9091
Entity #25 | Chains: o,p,q,r
Pre-mRNA-processing factor 19 protein, length: 503 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 2418
95 % 4 5 3061
90 % 4 5 3106
70 % 4 5 3078
50 % 4 5 3021
40 % 4 5 2970
30 % 4 5 2784
Entity #26 | Chains: t
Pre-mRNA-splicing factor SNT309 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 15762
95 % 4 5 14743
90 % 4 5 14470
70 % 4 5 13587
50 % 4 5 12076
40 % 4 5 10938
30 % 4 5 9509
Entity #27 | Chains: k,s
Small nuclear ribonucleoprotein-associated protein B protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 14 2117
95 % 9 14 2719
90 % 9 14 2768
70 % 9 14 2745
50 % 9 14 2717
40 % 9 14 2673
30 % 9 14 2511
Entity #28 | Chains: i,u
Small nuclear ribonucleoprotein E protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 14 2144
95 % 9 14 2748
90 % 9 14 2796
70 % 9 14 2771
50 % 9 15 2447
40 % 9 15 2423
30 % 9 15 2308
Entity #29 | Chains: h,w
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 15 1460
95 % 11 16 1204
90 % 11 16 1230
70 % 11 16 1266
50 % 11 16 1325
40 % 11 16 1333
30 % 11 16 1309
Entity #3 | Chains: D
U5 snRNA rna, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: j,x
Small nuclear ribonucleoprotein G protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 14 2146
95 % 9 14 2752
90 % 9 14 2799
70 % 9 14 2775
50 % 18 25 732
40 % 18 26 740
30 % 18 26 739
Entity #31 | Chains: l,y
Small nuclear ribonucleoprotein Sm D3 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 14 2142
95 % 9 14 2745
90 % 9 14 2794
70 % 9 14 2768
50 % 9 14 2736
40 % 9 14 2694
30 % 9 14 2530
Entity #32 | Chains: m,z
Small nuclear ribonucleoprotein Sm D1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 14 2127
95 % 9 14 2730
90 % 9 14 2781
70 % 9 14 2755
50 % 9 14 2726
40 % 9 14 2683
30 % 18 26 763
Entity #33 | Chains: e,g
Small nuclear ribonucleoprotein Sm D2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 2254
95 % 9 13 2898
90 % 9 13 2938
70 % 9 13 2897
50 % 19 26 711
40 % 19 26 737
30 % 19 26 735
Entity #34 | Chains: a
U2 small nuclear ribonucleoprotein B'' protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 14059
95 % 6 6 13337
90 % 6 6 13121
70 % 6 6 12340
50 % 6 6 11002
40 % 6 6 9974
30 % 6 6 8692
Entity #35 | Chains: b
U2 small nuclear ribonucleoprotein A' protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 12882
95 % 6 6 12413
90 % 6 6 12232
70 % 6 6 11549
50 % 6 6 10323
40 % 6 6 9360
30 % 6 6 8169
Entity #4 | Chains: E
U6 snRNA rna, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
U2 snRNA rna, length: 1175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: M
Intron_BPS rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: B
5'-Exon rna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: N
5'-Splicing Site rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: J
Pre-mRNA-splicing factor CWC21 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 10828
95 % 6 7 10826
90 % 6 7 10673
70 % 6 7 10138
50 % 6 7 9180
40 % 6 7 8403
30 % 6 7 7402

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures