Sequence Similarity Clusters for the Entities in PDB 5GMK

Entity #1 | Chains: A
Pre-mRNA-splicing factor 8 protein, length: 2413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 17 3718
95 % 14 18 3792
90 % 14 18 3859
70 % 14 18 3784
50 % 22 28 2303
40 % 22 28 2281
30 % 22 28 2147
Entity #10 | Chains: O
Pre-mRNA-splicing factor PRP46 protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 5441
95 % 11 12 5756
90 % 11 12 5775
70 % 11 12 5653
50 % 11 12 5367
40 % 11 12 5034
30 % 11 12 4493
Entity #11 | Chains: P
Pre-mRNA-processing protein 45 protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 5513
95 % 11 12 5823
90 % 11 12 5836
70 % 11 12 5707
50 % 11 12 5408
40 % 11 12 5063
30 % 11 12 4518
Entity #12 | Chains: Q
Pre-mRNA-splicing factor SLT11 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 5442
95 % 11 12 5757
90 % 11 12 5776
70 % 11 12 5654
50 % 11 12 5368
40 % 11 12 5035
30 % 11 12 4494
Entity #13 | Chains: R
Pre-mRNA-splicing factor CWC2 protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 6588
95 % 11 12 5824
90 % 11 12 5837
70 % 11 12 5708
50 % 11 12 5409
40 % 11 12 5064
30 % 11 12 4519
Entity #14 | Chains: S
Pre-mRNA-splicing factor CWC15 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 9778
95 % 10 11 6847
90 % 10 11 6824
70 % 10 11 6630
50 % 10 11 6167
40 % 10 11 5739
30 % 10 11 5033
Entity #15 | Chains: T
Pre-mRNA-splicing factor BUD31 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 13 5097
95 % 11 13 5407
90 % 11 13 5435
70 % 11 13 5302
50 % 17 20 3398
40 % 17 20 3269
30 % 17 20 3017
Entity #16 | Chains: Z
Pre-mRNA-splicing factor CWC22 protein, length: 577 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8331
95 % 10 11 6846
90 % 10 11 6823
70 % 10 11 6629
50 % 10 11 6166
40 % 10 11 5738
30 % 10 11 5032
Entity #17 | Chains: c
Pre-mRNA-splicing factor CEF1 protein, length: 587 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28910
95 % 2 3 24567
90 % 2 3 23757
70 % 2 3 21547
50 % 11 12 5644
40 % 11 12 5275
30 % 11 12 4673
Entity #18 | Chains: d
Pre-mRNA-splicing factor CLF1 protein, length: 687 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28017
95 % 2 3 24569
90 % 2 3 23759
70 % 1 2 31924
50 % 1 2 27145
40 % 1 2 23804
30 % 1 2 19844
Entity #19 | Chains: F
Protein CWC16 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 15751
95 % 5 5 14673
90 % 5 5 14392
70 % 5 5 13462
50 % 5 5 11930
40 % 5 5 10690
30 % 5 5 9112
Entity #2 | Chains: C
Pre-mRNA-splicing factor SNU114 protein, length: 1008 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 18 3486
95 % 14 18 3791
90 % 14 18 3858
70 % 14 18 3783
50 % 14 18 3698
40 % 14 18 3529
30 % 22 28 2161
Entity #20 | Chains: G
Pre-mRNA-splicing factor CWC25 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26118
95 % 3 3 23065
90 % 3 3 22314
70 % 3 3 20334
50 % 3 3 17394
40 % 3 3 15359
30 % 3 3 12876
Entity #21 | Chains: H
Pre-mRNA-splicing factor ISY1 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41686
95 % 3 3 23977
90 % 3 3 23174
70 % 3 3 21054
50 % 3 3 18117
40 % 3 3 16010
30 % 3 3 13427
Entity #22 | Chains: I
Pre-mRNA-splicing factor SYF2 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8112
95 % 8 9 8159
90 % 8 9 8085
70 % 8 9 7835
50 % 8 9 7198
40 % 8 9 6649
30 % 8 9 5805
Entity #23 | Chains: v
Pre-mRNA-splicing factor SYF1 protein, length: 859 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29948
95 % 2 3 26153
90 % 2 3 25224
70 % 1 2 26079
50 % 1 2 22341
40 % 1 2 19680
30 % 1 2 16486
Entity #24 | Chains: n
Pre-mRNA-processing factor 17 protein, length: 455 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8111
95 % 8 9 8158
90 % 8 9 8084
70 % 8 9 7834
50 % 8 9 7197
40 % 8 9 6648
30 % 8 9 5804
Entity #25 | Chains: o,p,q,r
Pre-mRNA-processing factor 19 protein, length: 503 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 1364
95 % 8 9 1598
90 % 8 9 1628
70 % 8 9 1656
50 % 8 9 1708
40 % 8 9 1694
30 % 8 9 1669
Entity #26 | Chains: t
Pre-mRNA-splicing factor SNT309 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 8632
95 % 8 9 8657
90 % 8 9 8586
70 % 8 9 8280
50 % 8 9 7604
40 % 8 9 6998
30 % 8 9 6120
Entity #27 | Chains: k,s
Small nuclear ribonucleoprotein-associated protein B protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1214
95 % 17 22 1443
90 % 17 22 1466
70 % 17 22 1480
50 % 17 22 1526
40 % 17 22 1510
30 % 17 22 1497
Entity #28 | Chains: i,u
Small nuclear ribonucleoprotein E protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1202
95 % 17 22 1435
90 % 17 22 1457
70 % 17 22 1471
50 % 17 23 1444
40 % 17 23 1426
30 % 17 23 1426
Entity #29 | Chains: h,w
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1219
95 % 19 24 881
90 % 19 24 914
70 % 19 24 949
50 % 19 24 993
40 % 19 24 1008
30 % 19 24 1000
Entity #3 | Chains: D
U5 snRNA rna, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: j,x
Small nuclear ribonucleoprotein G protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1213
95 % 17 22 1442
90 % 17 22 1465
70 % 17 22 1479
50 % 34 41 529
40 % 34 42 558
30 % 34 42 567
Entity #31 | Chains: l,y
Small nuclear ribonucleoprotein Sm D3 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1201
95 % 17 22 1434
90 % 17 22 1456
70 % 17 22 1470
50 % 17 22 1521
40 % 17 22 1505
30 % 17 22 1493
Entity #32 | Chains: m,z
Small nuclear ribonucleoprotein Sm D1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 22 1203
95 % 17 22 1436
90 % 17 22 1458
70 % 17 22 1472
50 % 17 22 1522
40 % 17 22 1506
30 % 17 22 1494
Entity #33 | Chains: e,g
Small nuclear ribonucleoprotein Sm D2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 21 1268
95 % 17 21 1479
90 % 17 21 1504
70 % 17 21 1519
50 % 36 43 511
40 % 36 43 556
30 % 36 43 559
Entity #34 | Chains: a
U2 small nuclear ribonucleoprotein B'' protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 13 5114
95 % 13 13 5423
90 % 13 13 5453
70 % 13 13 5324
50 % 13 13 5196
40 % 13 13 4877
30 % 13 13 4371
Entity #35 | Chains: b
U2 small nuclear ribonucleoprotein A' protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 13 5264
95 % 13 13 5572
90 % 13 13 5603
70 % 13 13 5478
50 % 13 13 5195
40 % 13 13 4876
30 % 13 13 4292
Entity #4 | Chains: E
U6 snRNA rna, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
U2 snRNA rna, length: 1175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: M
Intron_BPS rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: B
5'-Exon rna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: N
5'-Splicing Site rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: J
Pre-mRNA-splicing factor CWC21 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6971
95 % 9 10 7109
90 % 9 10 7081
70 % 9 10 6885
50 % 9 10 6394
40 % 9 10 5937
30 % 9 10 5214

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures