Sequence Similarity Clusters for the Entities in PDB 5GMK

Entity #1 | Chains: A
Pre-mRNA-splicing factor 8 protein, length: 2413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5089
95 % 10 14 5039
90 % 10 14 5075
70 % 10 14 4953
50 % 13 19 3391
40 % 13 19 3260
30 % 13 19 3014
Entity #10 | Chains: O
Pre-mRNA-splicing factor PRP46 protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6850
95 % 9 10 6995
90 % 9 10 6981
70 % 9 10 6785
50 % 9 10 6305
40 % 9 10 5856
30 % 9 10 5147
Entity #11 | Chains: P
Pre-mRNA-processing protein 45 protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6851
95 % 9 10 6996
90 % 9 10 6982
70 % 9 10 6786
50 % 9 10 6306
40 % 9 10 5857
30 % 9 10 5148
Entity #12 | Chains: Q
Pre-mRNA-splicing factor SLT11 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 6795
95 % 9 10 6945
90 % 9 10 6931
70 % 9 10 6732
50 % 9 10 6256
40 % 9 10 5811
30 % 9 10 5111
Entity #13 | Chains: R
Pre-mRNA-splicing factor CWC2 protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 7875
95 % 9 10 6997
90 % 9 10 6983
70 % 9 10 6787
50 % 9 10 6307
40 % 9 10 5858
30 % 9 10 5149
Entity #14 | Chains: S
Pre-mRNA-splicing factor CWC15 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 13296
95 % 8 9 8200
90 % 8 9 8126
70 % 8 9 7835
50 % 8 9 7185
40 % 8 9 6639
30 % 8 9 5806
Entity #15 | Chains: T
Pre-mRNA-splicing factor BUD31 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 6429
95 % 9 11 6577
90 % 9 11 6566
70 % 9 11 6367
50 % 11 14 4715
40 % 11 14 4439
30 % 11 14 4005
Entity #16 | Chains: Z
Pre-mRNA-splicing factor CWC22 protein, length: 577 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 9551
95 % 9 10 7282
90 % 9 10 7246
70 % 9 10 7048
50 % 9 10 6520
40 % 9 10 6043
30 % 9 10 5296
Entity #17 | Chains: c
Pre-mRNA-splicing factor CEF1 protein, length: 587 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28254
95 % 2 3 24714
90 % 2 3 23909
70 % 2 3 21737
50 % 9 10 6676
40 % 9 10 6182
30 % 9 10 5333
Entity #18 | Chains: d
Pre-mRNA-splicing factor CLF1 protein, length: 687 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27380
95 % 2 3 24017
90 % 2 3 23240
70 % 1 2 31430
50 % 1 2 26734
40 % 1 2 23452
30 % 1 2 19540
Entity #19 | Chains: F
Protein CWC16 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 17345
95 % 4 4 16063
90 % 4 4 15731
70 % 4 4 14701
50 % 4 4 12957
40 % 4 4 11618
30 % 4 4 9865
Entity #2 | Chains: C
Pre-mRNA-splicing factor SNU114 protein, length: 1008 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 14 4725
95 % 10 14 5038
90 % 10 14 5074
70 % 10 14 4952
50 % 10 14 4718
40 % 10 14 4441
30 % 13 19 3065
Entity #20 | Chains: G
Pre-mRNA-splicing factor CWC25 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25494
95 % 3 3 22503
90 % 3 3 21797
70 % 3 3 19932
50 % 3 3 17059
40 % 3 3 15067
30 % 3 3 12611
Entity #21 | Chains: H
Pre-mRNA-splicing factor ISY1 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40861
95 % 3 3 23414
90 % 3 3 22648
70 % 3 3 20655
50 % 3 3 17780
40 % 3 3 15719
30 % 3 3 13164
Entity #22 | Chains: I
Pre-mRNA-splicing factor SYF2 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 11122
95 % 6 7 10761
90 % 6 7 10612
70 % 6 7 10025
50 % 6 7 9037
40 % 6 7 8185
30 % 6 7 7083
Entity #23 | Chains: v
Pre-mRNA-splicing factor SYF1 protein, length: 859 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29262
95 % 2 3 25567
90 % 2 3 24682
70 % 1 2 25617
50 % 1 2 21952
40 % 1 2 19349
30 % 1 2 16198
Entity #24 | Chains: n
Pre-mRNA-processing factor 17 protein, length: 455 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 11121
95 % 6 7 10760
90 % 6 7 10611
70 % 6 7 10024
50 % 6 7 9036
40 % 6 7 8184
30 % 6 7 7082
Entity #25 | Chains: o,p,q,r
Pre-mRNA-processing factor 19 protein, length: 503 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 1900
95 % 6 7 2200
90 % 6 7 2254
70 % 6 7 2261
50 % 6 7 2247
40 % 6 7 2228
30 % 6 7 2096
Entity #26 | Chains: t
Pre-mRNA-splicing factor SNT309 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 11753
95 % 6 7 11356
90 % 6 7 11204
70 % 6 7 10576
50 % 6 7 9524
40 % 6 7 8622
30 % 6 7 7459
Entity #27 | Chains: k,s
Small nuclear ribonucleoprotein-associated protein B protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 2012
95 % 11 16 2309
90 % 11 16 2371
70 % 11 16 2369
50 % 11 16 2341
40 % 11 16 2321
30 % 11 16 2178
Entity #28 | Chains: i,u
Small nuclear ribonucleoprotein E protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 1976
95 % 11 16 2275
90 % 11 16 2332
70 % 11 16 2330
50 % 11 17 2147
40 % 11 17 2117
30 % 11 17 2000
Entity #29 | Chains: h,w
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 1975
95 % 13 18 1135
90 % 13 18 1164
70 % 13 18 1194
50 % 13 18 1235
40 % 13 18 1232
30 % 13 18 1230
Entity #3 | Chains: D
U5 snRNA rna, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: j,x
Small nuclear ribonucleoprotein G protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 1996
95 % 11 16 2293
90 % 11 16 2355
70 % 11 16 2352
50 % 20 27 703
40 % 20 28 711
30 % 20 28 713
Entity #31 | Chains: l,y
Small nuclear ribonucleoprotein Sm D3 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 1974
95 % 11 16 2274
90 % 11 16 2331
70 % 11 16 2329
50 % 11 16 2308
40 % 11 16 2286
30 % 11 16 2149
Entity #32 | Chains: m,z
Small nuclear ribonucleoprotein Sm D1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 1977
95 % 11 16 2276
90 % 11 16 2333
70 % 11 16 2331
50 % 11 16 2309
40 % 11 16 2287
30 % 11 16 2150
Entity #33 | Chains: e,g
Small nuclear ribonucleoprotein Sm D2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 15 2083
95 % 11 15 2385
90 % 11 15 2453
70 % 11 15 2447
50 % 21 28 682
40 % 21 28 721
30 % 21 28 725
Entity #34 | Chains: a
U2 small nuclear ribonucleoprotein B'' protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 9925
95 % 8 8 9727
90 % 8 8 9598
70 % 8 8 9157
50 % 8 8 8341
40 % 8 8 7616
30 % 8 8 6607
Entity #35 | Chains: b
U2 small nuclear ribonucleoprotein A' protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 9641
95 % 8 8 9489
90 % 8 8 9374
70 % 8 8 8954
50 % 8 8 8170
40 % 8 8 7466
30 % 8 8 6487
Entity #4 | Chains: E
U6 snRNA rna, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: L
U2 snRNA rna, length: 1175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: M
Intron_BPS rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: B
5'-Exon rna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: N
5'-Splicing Site rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: J
Pre-mRNA-splicing factor CWC21 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 7830
95 % 8 9 7909
90 % 8 9 7847
70 % 8 9 7612
50 % 8 9 6988
40 % 8 9 6459
30 % 8 9 5645

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures