Sequence Similarity Clusters for the Entities in PDB 5DK3

Entity #1 | Chains: A,F
Light Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14746
95 % 2 3 13805 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 268 761 2
70 % 861 2516 1
50 % 1763 5101 1
40 % 2043 5750 1
30 % 2486 7168 1
Entity #2 | Chains: B,G
Heavy Chain protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43801
95 % 1 1 36607 Flexibility: High
Max RMSD: 19.0, Avg RMSD: 19.0
PDBFlex
90 % 1 1 34950
70 % 3 6 6650
50 % 4 14 2130
40 % 4 20 1252
30 % 4 21 1202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures