Sequence Similarity Clusters for the Entities in PDB 5CXT

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q
RNA-binding protein 39 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 3499
95 % 4 7 2332 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.9
PDBFlex
90 % 4 7 2399
70 % 4 7 2396
50 % 4 7 2369
40 % 4 7 2339
30 % 4 7 2194
Entity #2 | Chains: B,D,F,H,J,L,N,P,R
Splicing factor U2AF 65 kDa subunit protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 3200
95 % 1 3 3517
90 % 1 3 3587
70 % 1 3 3530
50 % 1 3 3449
40 % 1 3 3309
30 % 1 3 3056

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures