Sequence Similarity Clusters for the Entities in PDB 5CXT

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q
RNA-binding protein 39 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 2930
95 % 4 7 2197 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 4 7 2254
70 % 4 7 2247
50 % 4 7 2225
40 % 4 7 2215
30 % 4 7 2119
Entity #2 | Chains: B,D,F,H,J,L,N,P,R
Splicing factor U2AF 65 kDa subunit protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2697
95 % 1 3 3351
90 % 1 3 3405
70 % 1 3 3374
50 % 1 3 3288
40 % 1 3 3194
30 % 1 3 3002

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.