Sequence Similarity Clusters for the Entities in PDB 5CXT

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q
RNA-binding protein 39 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 3014
95 % 4 7 2255 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 4 7 2311
70 % 4 7 2310
50 % 4 7 2291
40 % 4 7 2281
30 % 4 7 2172
Entity #2 | Chains: B,D,F,H,J,L,N,P,R
Splicing factor U2AF 65 kDa subunit protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2781
95 % 1 3 3433
90 % 1 3 3489
70 % 1 3 3455
50 % 1 3 3361
40 % 1 3 3261
30 % 1 3 3062

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures