Sequence Similarity Clusters for the Entities in PDB 5CD4

Entity #1 | Chains: A,M
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6932
95 % 6 7 7064 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 6 7 7044
70 % 6 7 6847
50 % 6 7 6361
40 % 6 7 5915
30 % 12 17 2197
Entity #2 | Chains: B,C,D,E,F,G,N,O,P,Q,R,S
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 805
95 % 5 6 995 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 5 6 1022
70 % 5 6 1064
50 % 5 6 1115
40 % 5 6 1118
30 % 5 9 841
Entity #3 | Chains: H,T
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7954
95 % 5 6 8014 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 6 7943
70 % 5 6 7691
50 % 5 6 7069
40 % 5 6 6537
30 % 5 6 5712
Entity #4 | Chains: I,U
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7955
95 % 5 6 8015 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 5 6 7944
70 % 5 6 7692
50 % 5 6 7070
40 % 5 6 6538
30 % 5 6 5713
Entity #5 | Chains: J,K,V,W
CRISPR system Cascade subunit CasB protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 3300
95 % 5 6 3601 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 3674
70 % 5 6 3608
50 % 5 6 3522
40 % 5 6 3367
30 % 5 6 3106
Entity #6 | Chains: L,X
crRNA rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures