Sequence Similarity Clusters for the Entities in PDB 5CD4

Entity #1 | Chains: A,M
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 7286
95 % 6 7 7421 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 6 7 7379
70 % 6 7 7149
50 % 6 7 6595
40 % 6 7 6119
30 % 12 17 2280
Entity #2 | Chains: B,C,D,E,F,G,N,O,P,Q,R,S
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 865
95 % 5 6 1060 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 5 6 1088
70 % 5 6 1114
50 % 5 6 1174
40 % 5 6 1166
30 % 5 9 879
Entity #3 | Chains: H,T
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 8353
95 % 5 6 8412 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 6 8324
70 % 5 6 8059
50 % 5 6 7353
40 % 5 6 6780
30 % 5 6 5912
Entity #4 | Chains: I,U
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 8354
95 % 5 6 8413 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 5 6 8325
70 % 5 6 8060
50 % 5 6 7354
40 % 5 6 6781
30 % 5 6 5913
Entity #5 | Chains: J,K,V,W
CRISPR system Cascade subunit CasB protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 3494
95 % 5 6 3792 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 3857
70 % 5 6 3784
50 % 5 6 3667
40 % 5 6 3505
30 % 5 6 3220
Entity #6 | Chains: L,X
crRNA rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures