Sequence Similarity Clusters for the Entities in PDB 5CD4

Entity #1 | Chains: A,M
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 7098
95 % 6 7 7234 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 6 7 7198
70 % 6 7 7001
50 % 6 7 6484
40 % 6 7 6025
30 % 12 17 2242
Entity #2 | Chains: B,C,D,E,F,G,N,O,P,Q,R,S
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 827
95 % 5 6 1016 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 5 6 1040
70 % 5 6 1078
50 % 5 6 1142
40 % 5 6 1143
30 % 5 9 861
Entity #3 | Chains: H,T
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 8136
95 % 5 6 8193 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 6 8115
70 % 5 6 7877
50 % 5 6 7216
40 % 5 6 6660
30 % 5 6 5804
Entity #4 | Chains: I,U
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 8137
95 % 5 6 8194 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 5 6 8116
70 % 5 6 7878
50 % 5 6 7217
40 % 5 6 6661
30 % 5 6 5805
Entity #5 | Chains: J,K,V,W
CRISPR system Cascade subunit CasB protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 3383
95 % 5 6 3687 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 3751
70 % 5 6 3695
50 % 5 6 3605
40 % 5 6 3452
30 % 5 6 3173
Entity #6 | Chains: L,X
crRNA rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures