Sequence Similarity Clusters for the Entities in PDB 5CD4

Entity #1 | Chains: A,M
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6550
95 % 6 7 7161 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 6 7 7136
70 % 6 7 6940
50 % 6 7 6424
40 % 6 7 5998
30 % 10 11 2736
Entity #2 | Chains: B,C,D,E,F,G,N,O,P,Q,R,S
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 699
95 % 5 6 961 Flexibility: Medium
Max RMSD: 11.6, Avg RMSD: 4.1
PDBFlex
90 % 5 6 995
70 % 5 6 1024
50 % 5 6 1072
40 % 5 6 1083
30 % 5 8 884
Entity #3 | Chains: H,T
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7336
95 % 5 6 7904 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 6 7853
70 % 5 6 7626
50 % 5 6 7023
40 % 5 6 6525
30 % 5 6 5822
Entity #4 | Chains: I,U
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7052
95 % 5 6 7622 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 5 6 7570
70 % 5 6 7365
50 % 5 6 6788
40 % 5 6 6323
30 % 5 6 5656
Entity #5 | Chains: J,K,V,W
CRISPR system Cascade subunit CasB protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2932
95 % 5 6 3632 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 3681
70 % 5 6 3628
50 % 5 6 3528
40 % 5 6 3406
30 % 5 6 3185
Entity #6 | Chains: L,X
crRNA rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures