Sequence Similarity Clusters for the Entities in PDB 5CD4

Entity #1 | Chains: A,M
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6712
95 % 6 7 7327 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 6 7 7305
70 % 6 7 7095
50 % 6 7 6563
40 % 6 7 6127
30 % 10 11 2790
Entity #2 | Chains: B,C,D,E,F,G,N,O,P,Q,R,S
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 716
95 % 5 6 978 Flexibility: Medium
Max RMSD: 11.6, Avg RMSD: 4.1
PDBFlex
90 % 5 6 1011
70 % 5 6 1044
50 % 5 6 1092
40 % 5 6 1105
30 % 5 8 902
Entity #3 | Chains: H,T
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7514
95 % 5 6 8084 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 5 6 8026
70 % 5 6 7789
50 % 5 6 7177
40 % 5 6 6664
30 % 5 6 5951
Entity #4 | Chains: I,U
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7218
95 % 5 6 7796 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 5 6 7742
70 % 5 6 7524
50 % 5 6 6935
40 % 5 6 6460
30 % 5 6 5784
Entity #5 | Chains: J,K,V,W
CRISPR system Cascade subunit CasB protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2998
95 % 5 6 3712 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 3773
70 % 5 6 3722
50 % 5 6 3617
40 % 5 6 3486
30 % 5 6 3261
Entity #6 | Chains: L,X
crRNA rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures