Sequence Similarity Clusters for the Entities in PDB 5ABY

Entity #1 | Chains: A,C,E
EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-3 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21989
95 % 2 2 19723 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 2 19178
70 % 2 4 12790
50 % 11 36 648
40 % 12 47 517
30 % 12 49 505
Entity #2 | Chains: B,D,F
4E-BINDING PROTEIN MEXTLI protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23157
95 % 2 2 20669 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 2 2 20064
70 % 2 2 18413
50 % 2 2 15977
40 % 2 2 14162
30 % 2 2 11890

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures