Sequence Similarity Clusters for the Entities in PDB 5ABY

Entity #1 | Chains: A,C,E
EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-3 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22480
95 % 2 2 20174 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 2 19598
70 % 2 4 13041
50 % 11 36 677
40 % 17 52 504
30 % 17 54 493
Entity #2 | Chains: B,D,F
4E-BINDING PROTEIN MEXTLI protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21700
95 % 2 2 19540 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 2 2 18992
70 % 2 2 17457
50 % 2 2 15207
40 % 2 2 13506
30 % 2 2 11385

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures