Sequence Similarity Clusters for the Entities in PDB 4YUU

Entity #1 | Chains: A1,A2,a1,a2
Photosystem II protein D1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19033
95 % 1 1 17004
90 % 1 1 16674
70 % 16 42 588
50 % 16 42 627
40 % 16 42 663
30 % 16 42 651
Entity #10 | Chains: K1,K2,k1,k2
Photosystem II reaction center protein K protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25006
95 % 1 1 21327
90 % 1 1 20718
70 % 13 27 1017
50 % 13 27 1064
40 % 13 27 1074
30 % 13 27 1051
Entity #11 | Chains: L1,L2,l1,l2
Photosystem II reaction center protein L protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25027
95 % 1 1 21346
90 % 1 1 20736
70 % 16 40 640
50 % 16 40 687
40 % 16 40 718
30 % 16 40 714
Entity #12 | Chains: M1,M2,m1,m2
PHOTOSYSTEM II REACTION CENTER PROTEIN M protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24159
95 % 1 1 20641
90 % 1 1 20063
70 % 1 1 18434
50 % 1 1 16002
40 % 1 1 14256
30 % 1 1 12201
Entity #13 | Chains: O1,O2,o1,o2
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19275
95 % 1 1 17152
90 % 1 1 16818
70 % 1 1 15659
50 % 1 1 13729
40 % 1 2 9107
30 % 1 2 7982
Entity #14 | Chains: T1,T2,t1,t2
Photosystem II reaction center protein T protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25105
95 % 1 1 21396
90 % 1 1 20780
70 % 1 5 6105
50 % 16 40 688
40 % 16 40 719
30 % 16 40 715
Entity #15 | Chains: U1,U2,u1,u2
Photosystem II 12 kDa extrinsic protein, chloroplastic protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22893
95 % 1 1 19714
90 % 1 1 19189
70 % 1 1 17728
50 % 1 1 15395
40 % 1 1 13695
30 % 1 1 11726
Entity #16 | Chains: V1,V2,v1,v2
Cytochrome c-550 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22894
95 % 1 1 19715
90 % 1 1 19190
70 % 1 1 17729
50 % 1 1 15396
40 % 1 1 13696
30 % 1 1 11727
Entity #17 | Chains: Y1,Y2,y1,y2
Photosystem II reaction center protein Ycf12 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25062
95 % 1 1 21369
90 % 1 1 20759
70 % 1 1 19063
50 % 1 1 16562
40 % 1 1 14774
30 % 1 1 12663
Entity #18 | Chains: X1,X2,x1,x2
PHOTOSYSTEM II REACTION CENTER PROTEIN X protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25013
95 % 1 1 21333
90 % 1 1 20724
70 % 1 1 19035
50 % 1 1 16537
40 % 1 1 14749
30 % 1 1 12638
Entity #19 | Chains: S1,S2,s1,s2
PEPTIDE CHAIN UNASSIGNED protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24982
95 % 1 1 21305
90 % 1 1 20697
70 % 1 1 19008
50 % 1 1 16513
40 % 1 1 14725
30 % 1 1 12615
Entity #2 | Chains: B1,B2,b1,b2
Photosystem II CP47 reaction center protein protein, length: 509 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17337
95 % 1 1 15917
90 % 1 1 15628
70 % 16 41 604
50 % 16 41 649
40 % 16 41 682
30 % 16 41 675
Entity #20 | Chains: W1,W2,w1,w2
PEPTIDE CHAIN UNASSIGNED protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25165
95 % 1 1 21452
90 % 1 1 20835
70 % 1 1 19131
50 % 1 1 16627
40 % 1 1 14839
30 % 1 1 12728
Entity #21 | Chains: Q2,q1
Extrinsic protein in photosystem II protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41121
95 % 1 1 31406
90 % 1 1 30158
70 % 1 1 26997
50 % 1 1 23046
40 % 1 1 20284
30 % 1 1 17182
Entity #22 | Chains: Z2,z2
Photosystem II reaction center protein Z protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49310
95 % 1 1 36822
90 % 1 1 35162
70 % 1 1 31246
50 % 1 1 26710
40 % 16 40 744
30 % 16 40 742
Entity #3 | Chains: C1,C2,c1,c2
Photosystem II CP43 reaction center protein protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17701
95 % 1 1 16148
90 % 1 1 15850
70 % 16 41 605
50 % 16 42 624
40 % 16 42 661
30 % 16 43 634
Entity #4 | Chains: D1,D2,d1,d2
Photosystem II D2 protein protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18926
95 % 1 1 16925
90 % 16 42 555
70 % 16 42 589
50 % 16 42 628
40 % 16 42 664
30 % 16 42 653
Entity #5 | Chains: E1,E2,e1,e2
Cytochrome b559 subunit alpha protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24602
95 % 1 1 20968
90 % 1 1 20376
70 % 1 5 6069
50 % 16 42 633
40 % 16 42 667
30 % 16 42 661
Entity #6 | Chains: F1,F2,f1,f2
Cytochrome b559 subunit beta protein, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25000
95 % 1 1 21320
90 % 1 1 20711
70 % 1 1 19023
50 % 14 32 893
40 % 14 32 919
30 % 14 32 905
Entity #7 | Chains: H1,H2,h1,h2
Photosystem II reaction center protein H protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24792
95 % 1 1 21141
90 % 1 1 20544
70 % 1 1 18869
50 % 16 36 775
40 % 16 36 809
30 % 16 36 797
Entity #8 | Chains: I1,I2,i1,i2
Photosystem II reaction center protein I protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25026
95 % 1 1 21345
90 % 1 1 20735
70 % 16 40 639
50 % 16 40 686
40 % 16 40 717
30 % 16 40 713
Entity #9 | Chains: J1,J2,j1,j2
Photosystem II reaction center protein J protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25020
95 % 1 1 21340
90 % 1 1 20730
70 % 1 1 19040
50 % 16 39 717
40 % 16 39 746
30 % 16 39 744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures