Sequence Similarity Clusters for the Entities in PDB 4YUU

Entity #1 | Chains: A1,A2,a1,a2
Photosystem II protein D1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18989
95 % 1 1 17367
90 % 1 1 16956
70 % 16 42 605
50 % 16 42 646
40 % 16 42 685
30 % 16 42 686
Entity #10 | Chains: K1,K2,k1,k2
Photosystem II reaction center protein K protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17844
95 % 1 1 16431
90 % 1 1 16079
70 % 13 27 1027
50 % 13 27 1076
40 % 13 27 1089
30 % 13 27 1083
Entity #11 | Chains: L1,L2,l1,l2
Photosystem II reaction center protein L protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17845
95 % 1 1 16432
90 % 1 1 16080
70 % 16 40 653
50 % 16 40 704
40 % 16 40 736
30 % 16 40 737
Entity #12 | Chains: M1,M2,m1,m2
PHOTOSYSTEM II REACTION CENTER PROTEIN M protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17842
95 % 1 1 16429
90 % 1 1 16077
70 % 1 1 15001
50 % 1 1 13195
40 % 1 1 11832
30 % 1 1 10020
Entity #13 | Chains: O1,O2,o1,o2
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17843
95 % 1 1 16430
90 % 1 1 16078
70 % 1 1 15002
50 % 1 1 13196
40 % 1 1 11833
30 % 1 1 10021
Entity #14 | Chains: T1,T2,t1,t2
Photosystem II reaction center protein T protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17840
95 % 1 1 16427
90 % 1 1 16075
70 % 1 5 5663
50 % 16 40 710
40 % 16 40 741
30 % 16 40 746
Entity #15 | Chains: U1,U2,u1,u2
Photosystem II 12 kDa extrinsic protein, chloroplastic protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17841
95 % 1 1 16428
90 % 1 1 16076
70 % 1 1 15000
50 % 1 1 13194
40 % 1 1 11831
30 % 1 1 10019
Entity #16 | Chains: V1,V2,v1,v2
Cytochrome c-550 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17838
95 % 1 1 16425
90 % 1 1 16073
70 % 1 1 14998
50 % 1 1 13192
40 % 1 1 11829
30 % 1 1 10017
Entity #17 | Chains: Y1,Y2,y1,y2
Photosystem II reaction center protein Ycf12 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17839
95 % 1 1 16426
90 % 1 1 16074
70 % 1 1 14999
50 % 1 1 13193
40 % 1 1 11830
30 % 1 1 10018
Entity #18 | Chains: X1,X2,x1,x2
PHOTOSYSTEM II REACTION CENTER PROTEIN X protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17846
95 % 1 1 16433
90 % 1 1 16081
70 % 1 1 15003
50 % 1 1 13197
40 % 1 1 11834
30 % 1 1 10022
Entity #19 | Chains: S1,S2,s1,s2
PEPTIDE CHAIN UNASSIGNED protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17847
95 % 1 1 16434
90 % 1 1 16082
70 % 1 1 15004
50 % 1 1 13198
40 % 1 1 11835
30 % 1 1 10023
Entity #2 | Chains: B1,B2,b1,b2
Photosystem II CP47 reaction center protein protein, length: 509 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20621
95 % 1 1 18642
90 % 1 1 18149
70 % 16 42 608
50 % 16 42 648
40 % 31 84 327
30 % 31 84 336
Entity #20 | Chains: W1,W2,w1,w2
PEPTIDE CHAIN UNASSIGNED protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18707
95 % 1 1 17115
90 % 1 1 16727
70 % 1 1 15542
50 % 1 1 13638
40 % 1 1 12197
30 % 1 1 10308
Entity #21 | Chains: Q2,q1
Extrinsic protein in photosystem II protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33193
95 % 1 1 28589
90 % 1 1 27474
70 % 1 1 24775
50 % 1 1 21257
40 % 1 1 18760
30 % 1 1 15706
Entity #22 | Chains: Z2,z2
Photosystem II reaction center protein Z protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33192
95 % 1 1 28588
90 % 1 1 27473
70 % 1 1 24774
50 % 1 1 21256
40 % 16 40 763
30 % 16 40 768
Entity #3 | Chains: C1,C2,c1,c2
Photosystem II CP43 reaction center protein protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18990
95 % 1 1 17368
90 % 1 1 16957
70 % 16 42 607
50 % 16 42 651
40 % 32 84 327
30 % 32 84 336
Entity #4 | Chains: D1,D2,d1,d2
Photosystem II D2 protein protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18985
95 % 1 1 17363
90 % 16 42 568
70 % 16 42 609
50 % 16 42 652
40 % 16 42 686
30 % 16 42 689
Entity #5 | Chains: E1,E2,e1,e2
Cytochrome b559 subunit alpha protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18986
95 % 1 1 17364
90 % 1 1 16953
70 % 1 5 6261
50 % 16 42 657
40 % 16 42 695
30 % 16 42 698
Entity #6 | Chains: F1,F2,f1,f2
Cytochrome b559 subunit beta protein, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18987
95 % 1 1 17365
90 % 1 1 16954
70 % 14 32 853
50 % 14 32 907
40 % 14 32 929
30 % 14 32 921
Entity #7 | Chains: H1,H2,h1,h2
Photosystem II reaction center protein H protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18988
95 % 1 1 17366
90 % 1 1 16955
70 % 1 1 15734
50 % 16 36 796
40 % 16 36 829
30 % 16 36 828
Entity #8 | Chains: I1,I2,i1,i2
Photosystem II reaction center protein I protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18983
95 % 1 1 17361
90 % 1 1 16951
70 % 16 40 658
50 % 16 40 708
40 % 16 40 739
30 % 16 40 742
Entity #9 | Chains: J1,J2,j1,j2
Photosystem II reaction center protein J protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18984
95 % 1 1 17362
90 % 1 1 16952
70 % 1 1 15733
50 % 16 39 731
40 % 16 39 759
30 % 16 39 763

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures