Sequence Similarity Clusters for the Entities in PDB 4YUU

Entity #1 | Chains: A1,A2,a1,a2
Photosystem II protein D1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18117
95 % 1 1 16233
90 % 1 1 15906
70 % 14 38 632
50 % 14 38 677
40 % 14 38 708
30 % 14 38 705
Entity #10 | Chains: K1,K2,k1,k2
Photosystem II reaction center protein K protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23845
95 % 1 1 20347
90 % 1 1 19784
70 % 12 26 1014
50 % 12 26 1051
40 % 12 26 1059
30 % 12 26 1039
Entity #11 | Chains: L1,L2,l1,l2
Photosystem II reaction center protein L protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23865
95 % 1 1 20367
90 % 1 1 19805
70 % 14 36 688
50 % 14 36 734
40 % 14 36 762
30 % 14 36 756
Entity #12 | Chains: M1,M2,m1,m2
PHOTOSYSTEM II REACTION CENTER PROTEIN M protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23035
95 % 1 1 19692
90 % 1 1 19147
70 % 1 1 17647
50 % 1 1 15353
40 % 1 1 13686
30 % 1 1 11710
Entity #13 | Chains: O1,O2,o1,o2
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18346
95 % 1 1 16370
90 % 1 1 16039
70 % 1 1 14937
50 % 1 1 13128
40 % 1 2 8716
30 % 1 2 7629
Entity #14 | Chains: T1,T2,t1,t2
Photosystem II reaction center protein T protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23938
95 % 1 1 20416
90 % 1 1 19850
70 % 1 3 9124
50 % 14 36 735
40 % 14 36 763
30 % 14 36 757
Entity #15 | Chains: U1,U2,u1,u2
Photosystem II 12 kDa extrinsic protein, chloroplastic protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21807
95 % 1 1 18807
90 % 1 1 18316
70 % 1 1 16960
50 % 1 1 14764
40 % 1 1 13140
30 % 1 1 11242
Entity #16 | Chains: V1,V2,v1,v2
Cytochrome c-550 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21808
95 % 1 1 18808
90 % 1 1 18317
70 % 1 1 16961
50 % 1 1 14765
40 % 1 1 13141
30 % 1 1 11243
Entity #17 | Chains: Y1,Y2,y1,y2
Photosystem II reaction center protein Ycf12 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23898
95 % 1 1 20390
90 % 1 1 19828
70 % 1 1 18267
50 % 1 1 15900
40 % 1 1 14195
30 % 1 1 12164
Entity #18 | Chains: X1,X2,x1,x2
PHOTOSYSTEM II REACTION CENTER PROTEIN X protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23852
95 % 1 1 20353
90 % 1 1 19790
70 % 1 1 18235
50 % 1 1 15872
40 % 1 1 14167
30 % 1 1 12136
Entity #19 | Chains: S1,S2,s1,s2
PEPTIDE CHAIN UNASSIGNED protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23821
95 % 1 1 20325
90 % 1 1 19763
70 % 1 1 18207
50 % 1 1 15848
40 % 1 1 14143
30 % 1 1 12113
Entity #2 | Chains: B1,B2,b1,b2
Photosystem II CP47 reaction center protein protein, length: 509 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16501
95 % 1 1 15197
90 % 1 1 14911
70 % 14 37 647
50 % 14 37 696
40 % 14 37 726
30 % 14 37 718
Entity #20 | Chains: W1,W2,w1,w2
PEPTIDE CHAIN UNASSIGNED protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23992
95 % 1 1 20471
90 % 1 1 19903
70 % 1 1 18335
50 % 1 1 15964
40 % 1 1 14259
30 % 1 1 12228
Entity #21 | Chains: Q2,q1
Extrinsic protein in photosystem II protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39334
95 % 1 1 30070
90 % 1 1 28895
70 % 1 1 25982
50 % 1 1 22226
40 % 1 1 19563
30 % 1 1 16564
Entity #22 | Chains: Z2,z2
Photosystem II reaction center protein Z protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47303
95 % 1 1 35353
90 % 1 1 33800
70 % 1 1 30142
50 % 1 1 25814
40 % 1 1 22791
30 % 14 36 785
Entity #3 | Chains: C1,C2,c1,c2
Photosystem II CP43 reaction center protein protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16846
95 % 1 1 15414
90 % 1 1 15117
70 % 14 37 648
50 % 14 38 672
40 % 14 38 703
30 % 14 39 682
Entity #4 | Chains: D1,D2,d1,d2
Photosystem II D2 protein protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18018
95 % 1 1 16156
90 % 14 38 596
70 % 14 38 633
50 % 14 38 678
40 % 14 38 709
30 % 14 38 706
Entity #5 | Chains: E1,E2,e1,e2
Cytochrome b559 subunit alpha protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23461
95 % 1 1 20002
90 % 1 1 19450
70 % 1 3 9041
50 % 14 38 685
40 % 14 38 715
30 % 14 38 710
Entity #6 | Chains: F1,F2,f1,f2
Cytochrome b559 subunit beta protein, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23839
95 % 1 1 20340
90 % 1 1 19777
70 % 1 1 18222
50 % 12 30 912
40 % 12 30 935
30 % 12 30 915
Entity #7 | Chains: H1,H2,h1,h2
Photosystem II reaction center protein H protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23642
95 % 1 1 20171
90 % 1 1 19614
70 % 1 1 18071
50 % 14 34 790
40 % 14 34 824
30 % 14 34 815
Entity #8 | Chains: I1,I2,i1,i2
Photosystem II reaction center protein I protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23864
95 % 1 1 20366
90 % 1 1 19804
70 % 14 36 687
50 % 14 36 733
40 % 14 36 761
30 % 14 36 755
Entity #9 | Chains: J1,J2,j1,j2
Photosystem II reaction center protein J protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23859
95 % 1 1 20360
90 % 1 1 19798
70 % 1 1 18242
50 % 14 35 758
40 % 14 35 791
30 % 14 35 786

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.