Sequence Similarity Clusters for the Entities in PDB 4YUU

Entity #1 | Chains: A1,A2,a1,a2
Photosystem II protein D1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18451
95 % 1 1 16538
90 % 1 1 16207
70 % 16 42 567
50 % 16 42 614
40 % 16 42 645
30 % 16 42 640
Entity #10 | Chains: K1,K2,k1,k2
Photosystem II reaction center protein K protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24301
95 % 1 1 20757
90 % 1 1 20178
70 % 13 27 986
50 % 13 27 1030
40 % 13 27 1043
30 % 13 27 1016
Entity #11 | Chains: L1,L2,l1,l2
Photosystem II reaction center protein L protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24323
95 % 1 1 20777
90 % 1 1 20197
70 % 16 40 622
50 % 16 40 666
40 % 16 40 697
30 % 16 40 695
Entity #12 | Chains: M1,M2,m1,m2
PHOTOSYSTEM II REACTION CENTER PROTEIN M protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23475
95 % 1 1 20092
90 % 1 1 19534
70 % 1 1 17943
50 % 1 1 15595
40 % 1 1 13905
30 % 1 1 11890
Entity #13 | Chains: O1,O2,o1,o2
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18686
95 % 1 1 16678
90 % 1 1 16343
70 % 1 1 15217
50 % 1 1 13364
40 % 1 2 8882
30 % 1 2 7778
Entity #14 | Chains: T1,T2,t1,t2
Photosystem II reaction center protein T protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24399
95 % 1 1 20825
90 % 1 1 20240
70 % 1 5 5933
50 % 16 40 667
40 % 16 40 698
30 % 16 40 696
Entity #15 | Chains: U1,U2,u1,u2
Photosystem II 12 kDa extrinsic protein, chloroplastic protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22223
95 % 1 1 19184
90 % 1 1 18679
70 % 1 1 17248
50 % 1 1 15001
40 % 1 1 13355
30 % 1 1 11421
Entity #16 | Chains: V1,V2,v1,v2
Cytochrome c-550 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22224
95 % 1 1 19185
90 % 1 1 18680
70 % 1 1 17249
50 % 1 1 15002
40 % 1 1 13356
30 % 1 1 11422
Entity #17 | Chains: Y1,Y2,y1,y2
Photosystem II reaction center protein Ycf12 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24357
95 % 1 1 20799
90 % 1 1 20220
70 % 1 1 18570
50 % 1 1 16144
40 % 1 1 14412
30 % 1 1 12341
Entity #18 | Chains: X1,X2,x1,x2
PHOTOSYSTEM II REACTION CENTER PROTEIN X protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24308
95 % 1 1 20763
90 % 1 1 20184
70 % 1 1 18539
50 % 1 1 16117
40 % 1 1 14385
30 % 1 1 12314
Entity #19 | Chains: S1,S2,s1,s2
PEPTIDE CHAIN UNASSIGNED protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24277
95 % 1 1 20735
90 % 1 1 20157
70 % 1 1 18512
50 % 1 1 16093
40 % 1 1 14361
30 % 1 1 12291
Entity #2 | Chains: B1,B2,b1,b2
Photosystem II CP47 reaction center protein protein, length: 509 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16804
95 % 1 1 15477
90 % 1 1 15185
70 % 16 41 589
50 % 16 41 632
40 % 16 41 664
30 % 16 41 664
Entity #20 | Chains: W1,W2,w1,w2
PEPTIDE CHAIN UNASSIGNED protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24453
95 % 1 1 20880
90 % 1 1 20294
70 % 1 1 18636
50 % 1 1 16207
40 % 1 1 14475
30 % 1 1 12404
Entity #21 | Chains: Q2,q1
Extrinsic protein in photosystem II protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39975
95 % 1 1 30550
90 % 1 1 29349
70 % 1 1 26344
50 % 1 1 22499
40 % 1 1 19803
30 % 1 1 16767
Entity #22 | Chains: Z2,z2
Photosystem II reaction center protein Z protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48016
95 % 1 1 35876
90 % 1 1 34283
70 % 1 1 30523
50 % 1 1 26120
40 % 16 40 727
30 % 16 40 723
Entity #3 | Chains: C1,C2,c1,c2
Photosystem II CP43 reaction center protein protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17156
95 % 1 1 15702
90 % 1 1 15400
70 % 16 41 590
50 % 16 42 611
40 % 16 42 643
30 % 16 43 625
Entity #4 | Chains: D1,D2,d1,d2
Photosystem II D2 protein protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18349
95 % 1 1 16461
90 % 16 42 524
70 % 16 42 568
50 % 16 42 615
40 % 16 42 646
30 % 16 42 642
Entity #5 | Chains: E1,E2,e1,e2
Cytochrome b559 subunit alpha protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23908
95 % 1 1 20407
90 % 1 1 19842
70 % 1 5 5899
50 % 16 42 618
40 % 16 42 649
30 % 16 42 648
Entity #6 | Chains: F1,F2,f1,f2
Cytochrome b559 subunit beta protein, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24295
95 % 1 1 20750
90 % 1 1 20171
70 % 1 1 18527
50 % 14 32 871
40 % 14 32 899
30 % 14 32 882
Entity #7 | Chains: H1,H2,h1,h2
Photosystem II reaction center protein H protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24092
95 % 1 1 20577
90 % 1 1 20007
70 % 1 1 18373
50 % 16 36 758
40 % 16 36 790
30 % 16 36 782
Entity #8 | Chains: I1,I2,i1,i2
Photosystem II reaction center protein I protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24322
95 % 1 1 20776
90 % 1 1 20196
70 % 16 40 621
50 % 16 40 665
40 % 16 40 696
30 % 16 40 694
Entity #9 | Chains: J1,J2,j1,j2
Photosystem II reaction center protein J protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24316
95 % 1 1 20771
90 % 1 1 20191
70 % 1 1 18545
50 % 16 39 694
40 % 16 39 728
30 % 16 39 724

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.