Sequence Similarity Clusters for the Entities in PDB 4YUU

Entity #1 | Chains: A1,A2,a1,a2
Photosystem II protein D1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18714
95 % 1 1 16756
90 % 1 1 16427
70 % 16 42 577
50 % 16 42 621
40 % 16 42 653
30 % 16 42 646
Entity #10 | Chains: K1,K2,k1,k2
Photosystem II reaction center protein K protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24613
95 % 1 1 21015
90 % 1 1 20434
70 % 13 27 1002
50 % 13 27 1045
40 % 13 27 1055
30 % 13 27 1033
Entity #11 | Chains: L1,L2,l1,l2
Photosystem II reaction center protein L protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24634
95 % 1 1 21034
90 % 1 1 20452
70 % 16 40 631
50 % 16 40 676
40 % 16 40 705
30 % 16 40 702
Entity #12 | Chains: M1,M2,m1,m2
PHOTOSYSTEM II REACTION CENTER PROTEIN M protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 23775
95 % 1 1 20336
90 % 1 1 19776
70 % 1 1 18151
50 % 1 1 15771
40 % 1 1 14058
30 % 1 1 12029
Entity #13 | Chains: O1,O2,o1,o2
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18954
95 % 1 1 16900
90 % 1 1 16567
70 % 1 1 15416
50 % 1 1 13527
40 % 1 2 8979
30 % 1 2 7868
Entity #14 | Chains: T1,T2,t1,t2
Photosystem II reaction center protein T protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24710
95 % 1 1 21082
90 % 1 1 20494
70 % 1 5 6018
50 % 16 40 677
40 % 16 40 706
30 % 16 40 703
Entity #15 | Chains: U1,U2,u1,u2
Photosystem II 12 kDa extrinsic protein, chloroplastic protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22520
95 % 1 1 19422
90 % 1 1 18917
70 % 1 1 17455
50 % 1 1 15170
40 % 1 1 13502
30 % 1 1 11558
Entity #16 | Chains: V1,V2,v1,v2
Cytochrome c-550 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 22521
95 % 1 1 19423
90 % 1 1 18918
70 % 1 1 17456
50 % 1 1 15171
40 % 1 1 13503
30 % 1 1 11559
Entity #17 | Chains: Y1,Y2,y1,y2
Photosystem II reaction center protein Ycf12 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24667
95 % 1 1 21055
90 % 1 1 20473
70 % 1 1 18781
50 % 1 1 16329
40 % 1 1 14575
30 % 1 1 12490
Entity #18 | Chains: X1,X2,x1,x2
PHOTOSYSTEM II REACTION CENTER PROTEIN X protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24620
95 % 1 1 21021
90 % 1 1 20440
70 % 1 1 18752
50 % 1 1 16303
40 % 1 1 14549
30 % 1 1 12464
Entity #19 | Chains: S1,S2,s1,s2
PEPTIDE CHAIN UNASSIGNED protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24589
95 % 1 1 20993
90 % 1 1 20413
70 % 1 1 18725
50 % 1 1 16279
40 % 1 1 14525
30 % 1 1 12441
Entity #2 | Chains: B1,B2,b1,b2
Photosystem II CP47 reaction center protein protein, length: 509 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17047
95 % 1 1 15686
90 % 1 1 15394
70 % 16 41 599
50 % 16 41 640
40 % 16 41 672
30 % 16 41 669
Entity #20 | Chains: W1,W2,w1,w2
PEPTIDE CHAIN UNASSIGNED protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24765
95 % 1 1 21137
90 % 1 1 20548
70 % 1 1 18848
50 % 1 1 16393
40 % 1 1 14639
30 % 1 1 12554
Entity #21 | Chains: Q2,q1
Extrinsic protein in photosystem II protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40510
95 % 1 1 30951
90 % 1 1 29732
70 % 1 1 26645
50 % 1 1 22740
40 % 1 1 20024
30 % 1 1 16964
Entity #22 | Chains: Z2,z2
Photosystem II reaction center protein Z protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48610
95 % 1 1 36310
90 % 1 1 34693
70 % 1 1 30856
50 % 1 1 26381
40 % 16 40 735
30 % 16 40 733
Entity #3 | Chains: C1,C2,c1,c2
Photosystem II CP43 reaction center protein protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17402
95 % 1 1 15914
90 % 1 1 15613
70 % 16 41 600
50 % 16 42 618
40 % 16 42 651
30 % 16 43 631
Entity #4 | Chains: D1,D2,d1,d2
Photosystem II D2 protein protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18609
95 % 1 1 16676
90 % 16 42 537
70 % 16 42 578
50 % 16 42 622
40 % 16 42 654
30 % 16 42 648
Entity #5 | Chains: E1,E2,e1,e2
Cytochrome b559 subunit alpha protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24213
95 % 1 1 20658
90 % 1 1 20091
70 % 1 5 5985
50 % 16 42 626
40 % 16 42 658
30 % 16 42 654
Entity #6 | Chains: F1,F2,f1,f2
Cytochrome b559 subunit beta protein, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24607
95 % 1 1 21008
90 % 1 1 20427
70 % 1 1 18740
50 % 14 32 882
40 % 14 32 909
30 % 14 32 893
Entity #7 | Chains: H1,H2,h1,h2
Photosystem II reaction center protein H protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24399
95 % 1 1 20830
90 % 1 1 20258
70 % 1 1 18585
50 % 16 36 768
40 % 16 36 801
30 % 16 36 790
Entity #8 | Chains: I1,I2,i1,i2
Photosystem II reaction center protein I protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24633
95 % 1 1 21033
90 % 1 1 20451
70 % 16 40 630
50 % 16 40 675
40 % 16 40 704
30 % 16 40 701
Entity #9 | Chains: J1,J2,j1,j2
Photosystem II reaction center protein J protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24627
95 % 1 1 21028
90 % 1 1 20446
70 % 1 1 18757
50 % 16 39 706
40 % 16 39 736
30 % 16 39 734

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.