Sequence Similarity Clusters for the Entities in PDB 4V7S

Entity #1 | Chains: AA
16S rRNA rna, length: 1533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 151 152
95 % 24 151 187
90 % 24 151 194
70 % 27 155 190
50 % 141 468 24
40 % 155 592 20
30 % 155 594 34
Entity #11 | Chains: AK,CK
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 149 160
95 % 23 149 198
90 % 23 149 207
70 % 23 149 223
50 % 135 462 32
40 % 151 601 19
30 % 151 601 33
Entity #12 | Chains: AL,CL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 151 154
95 % 23 151 188
90 % 23 151 196
70 % 135 476 14
50 % 135 479 23
40 % 135 479 37
30 % 135 479 56
Entity #13 | Chains: AM
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 153 158
95 % 25 153 194
90 % 25 153 201
70 % 25 153 222
50 % 137 466 30
40 % 137 466 43
30 % 151 598 37
Entity #14 | Chains: AN,CN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 169
95 % 23 146 205
90 % 23 146 215
70 % 23 146 232
50 % 23 146 251
40 % 23 152 269
30 % 23 152 282
Entity #15 | Chains: AO,CO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 77 343
95 % 24 151 189
90 % 24 151 197
70 % 24 151 216
50 % 142 474 25
40 % 142 479 36
30 % 142 479 55
Entity #16 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 150 167
95 % 25 150 204
90 % 25 150 213
70 % 25 150 229
50 % 25 150 250
40 % 137 464 45
30 % 137 464 63
Entity #17 | Chains: AQ,CQ
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 149 162
95 % 23 149 199
90 % 23 149 208
70 % 23 149 224
50 % 23 162 227
40 % 23 162 253
30 % 23 164 265
Entity #18 | Chains: AR,CR
30S ribosomal protein S18 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 648
95 % 19 44 790
90 % 19 44 820
70 % 19 44 867
50 % 19 48 835
40 % 19 48 861
30 % 19 48 861
Entity #19 | Chains: AS,CS
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 148 166
95 % 23 148 202
90 % 23 148 211
70 % 23 161 186
50 % 136 468 27
40 % 136 471 38
30 % 136 471 57
Entity #2 | Chains: AB,CB
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 145 168
95 % 23 145 206
90 % 23 145 216
70 % 23 145 233
50 % 135 452 34
40 % 135 458 46
30 % 135 458 64
Entity #20 | Chains: AT,CT
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 148 165
95 % 23 148 203
90 % 23 148 212
70 % 23 148 228
50 % 23 148 248
40 % 23 162 252
30 % 23 162 267
Entity #21 | Chains: AU,CU
30S ribosomal protein S21 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 691
95 % 19 40 849
90 % 19 40 881
70 % 19 40 919
50 % 19 41 937
40 % 19 41 954
30 % 19 42 931
Entity #22 | Chains: BA,DA
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: BB
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BC,DC
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 154 148
95 % 23 154 183
90 % 23 154 190
70 % 23 154 212
50 % 92 387 45
40 % 92 387 64
30 % 92 387 80
Entity #25 | Chains: BD,DD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 165 127
95 % 29 165 160
90 % 29 165 169
70 % 29 165 192
50 % 97 390 49
40 % 97 394 61
30 % 97 395 77
Entity #26 | Chains: BE,DE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 157 138
95 % 23 157 174
90 % 23 157 182
70 % 23 157 205
50 % 23 157 237
40 % 93 387 63
30 % 93 387 79
Entity #27 | Chains: BF
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 161 133
95 % 25 161 168
90 % 25 161 176
70 % 25 161 199
50 % 97 385 46
40 % 97 385 65
30 % 97 385 81
Entity #28 | Chains: BG,DG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 156 140
95 % 23 156 176
90 % 23 156 185
70 % 23 156 206
50 % 23 156 240
40 % 92 390 60
30 % 164 593 39
Entity #29 | Chains: BH,DH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 142 177
95 % 21 142 217
90 % 21 142 228
70 % 21 142 249
50 % 21 142 273
40 % 81 304 105
30 % 81 307 118
Entity #3 | Chains: AC,CC
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 71 390
95 % 19 71 496
90 % 19 71 529
70 % 19 71 563
50 % 33 127 306
40 % 33 133 322
30 % 33 133 330
Entity #30 | Chains: BI,DI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 150 157
95 % 23 150 192
90 % 23 150 200
70 % 23 150 220
50 % 37 240 153
40 % 37 243 164
30 % 37 246 177
Entity #31 | Chains: BJ,DJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 158 130
95 % 23 158 165
90 % 23 158 173
70 % 23 158 196
50 % 90 358 68
40 % 90 358 89
30 % 90 359 103
Entity #32 | Chains: BK,DK
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 159 128
95 % 23 159 161
90 % 23 159 170
70 % 23 159 193
50 % 92 398 38
40 % 164 604 21
30 % 164 604 35
Entity #33 | Chains: BL,DL
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 158 134
95 % 23 158 169
90 % 23 158 177
70 % 23 158 200
50 % 91 380 54
40 % 91 380 74
30 % 91 380 88
Entity #34 | Chains: BM,DM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 154 150
95 % 23 154 185
90 % 23 154 192
70 % 23 154 214
50 % 91 386 47
40 % 91 386 66
30 % 91 386 82
Entity #35 | Chains: BN,DN
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 157 137
95 % 23 157 172
90 % 23 157 180
70 % 23 157 203
50 % 92 379 44
40 % 92 386 56
30 % 92 388 71
Entity #36 | Chains: BO,DO
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 155 144
95 % 23 155 180
90 % 23 155 187
70 % 23 155 209
50 % 91 381 53
40 % 91 381 72
30 % 91 381 87
Entity #37 | Chains: BP,DP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 157 136
95 % 23 157 171
90 % 23 157 179
70 % 23 157 202
50 % 90 360 65
40 % 90 360 84
30 % 90 360 101
Entity #38 | Chains: BQ,DQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 158 132
95 % 23 158 167
90 % 23 158 175
70 % 23 158 197
50 % 92 385 43
40 % 92 393 55
30 % 92 393 72
Entity #39 | Chains: BR,DR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 154 149
95 % 23 154 184
90 % 23 154 191
70 % 23 154 213
50 % 23 154 242
40 % 91 380 75
30 % 91 380 90
Entity #4 | Chains: AD,CD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 149 164
95 % 23 149 201
90 % 23 149 210
70 % 23 149 226
50 % 135 462 29
40 % 135 468 40
30 % 135 468 60
Entity #40 | Chains: BS,DS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 157 135
95 % 23 157 170
90 % 23 157 178
70 % 23 157 201
50 % 92 359 69
40 % 92 359 90
30 % 92 361 104
Entity #41 | Chains: BT,DT
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 125
95 % 23 161 158
90 % 23 161 167
70 % 23 161 189
50 % 23 161 231
40 % 149 465 42
30 % 149 465 62
Entity #42 | Chains: BU,DU
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 160 126
95 % 23 160 159
90 % 23 160 168
70 % 23 160 191
50 % 91 383 50
40 % 91 385 67
30 % 91 385 84
Entity #43 | Chains: BV,DV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 161 124
95 % 24 161 157
90 % 24 161 166
70 % 24 161 188
50 % 25 162 224
40 % 25 162 247
30 % 25 162 262
Entity #44 | Chains: BW,DW
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 157 141
95 % 24 157 177
90 % 24 157 183
70 % 25 186 172
50 % 93 383 48
40 % 93 383 68
30 % 93 383 83
Entity #45 | Chains: BX,DX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 173
95 % 23 142 212
90 % 23 142 223
70 % 23 142 242
50 % 23 142 265
40 % 23 142 293
30 % 23 142 308
Entity #46 | Chains: BY,DY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 123
95 % 23 161 156
90 % 23 161 165
70 % 23 161 187
50 % 23 161 230
40 % 148 425 51
30 % 149 451 66
Entity #47 | Chains: BZ,DZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 158 131
95 % 23 158 166
90 % 23 158 174
70 % 23 158 198
50 % 24 203 191
40 % 92 386 62
30 % 92 386 78
Entity #48 | Chains: B0,D0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 155 142
95 % 23 155 178
90 % 23 155 186
70 % 23 155 208
50 % 91 376 63
40 % 91 382 69
30 % 91 382 85
Entity #49 | Chains: B1,D1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 154 146
95 % 23 154 182
90 % 23 154 189
70 % 23 154 211
50 % 24 175 213
40 % 77 350 97
30 % 77 350 111
Entity #5 | Chains: AE,CE
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 150 155
95 % 23 150 193
90 % 23 150 202
70 % 23 150 221
50 % 136 463 31
40 % 136 463 44
30 % 136 465 61
Entity #50 | Chains: B2,D2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 153 151
95 % 23 153 186
90 % 23 153 193
70 % 24 182 176
50 % 24 205 190
40 % 24 205 207
30 % 24 205 225
Entity #51 | Chains: B3,D3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 150 156
95 % 23 150 191
90 % 23 150 199
70 % 23 150 219
50 % 23 150 243
40 % 92 375 82
30 % 92 375 96
Entity #52 | Chains: B4,D4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 149 159
95 % 23 149 196
90 % 23 149 205
70 % 69 321 48
50 % 69 324 87
40 % 69 324 107
30 % 69 324 121
Entity #53 | Chains: CA
16S rRNA rna, length: 1530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CG
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 81 346
95 % 21 81 439
90 % 21 81 480
70 % 21 81 511
50 % 135 401 62
40 % 135 407 71
30 % 135 407 86
Entity #55 | Chains: CM
30S ribosomal protein S13 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 153 158
95 % 26 153 194
90 % 26 153 201
70 % 26 153 222
50 % 138 466 30
40 % 138 466 43
30 % 152 598 37
Entity #56 | Chains: CP
30S ribosomal protein S16 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 150 167
95 % 26 150 204
90 % 26 150 213
70 % 26 150 229
50 % 26 150 250
40 % 138 464 45
30 % 138 464 63
Entity #57 | Chains: DB
5S rRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: DF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 161 133
95 % 26 161 168
90 % 26 161 176
70 % 26 161 199
50 % 98 385 46
40 % 98 385 65
30 % 98 385 81
Entity #6 | Chains: AF,CF
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 73 377
95 % 19 73 479
90 % 19 73 508
70 % 19 73 544
50 % 19 73 581
40 % 19 73 621
30 % 141 398 89
Entity #7 | Chains: AG
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 81 346
95 % 22 81 439
90 % 22 81 480
70 % 22 81 511
50 % 136 401 62
40 % 136 407 71
30 % 136 407 86
Entity #8 | Chains: AH,CH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 150 153
95 % 24 150 190
90 % 24 150 198
70 % 24 150 217
50 % 138 467 26
40 % 154 614 18
30 % 154 614 32
Entity #9 | Chains: AI,CI
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 149 163
95 % 23 149 200
90 % 23 149 209
70 % 23 149 225
50 % 135 456 33
40 % 135 457 47
30 % 149 596 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures