Sequence Similarity Clusters for the Entities in PDB 4V7S

Entity #1 | Chains: AA
16S rRNA rna, length: 1533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 141 139
95 % 24 142 172
90 % 24 142 182
70 % 27 146 190
50 % 130 432 28
40 % 130 432 41
30 % 144 545 34
Entity #11 | Chains: AK,CK
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 149
95 % 23 140 195
90 % 23 140 205
70 % 23 140 229
50 % 124 426 35
40 % 140 557 19
30 % 140 557 33
Entity #12 | Chains: AL,CL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 127 170
95 % 23 142 180
90 % 23 142 190
70 % 124 430 21
50 % 124 443 26
40 % 124 443 39
30 % 124 443 58
Entity #13 | Chains: AM
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 144 145
95 % 25 144 190
90 % 25 144 200
70 % 25 144 224
50 % 126 430 34
40 % 126 430 46
30 % 140 546 37
Entity #14 | Chains: AN,CN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 125 169
95 % 23 137 206
90 % 23 137 216
70 % 23 137 243
50 % 23 137 263
40 % 23 142 268
30 % 23 142 273
Entity #15 | Chains: AO,CO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 112 185
95 % 24 142 184
90 % 24 142 194
70 % 24 142 218
50 % 131 439 27
40 % 131 444 37
30 % 131 444 57
Entity #16 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 141 157
95 % 25 141 203
90 % 25 141 213
70 % 25 141 238
50 % 25 141 261
40 % 25 141 273
30 % 126 423 65
Entity #17 | Chains: AQ,CQ
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 150
95 % 23 140 196
90 % 23 140 206
70 % 23 140 230
50 % 23 153 230
40 % 23 153 248
30 % 23 155 256
Entity #18 | Chains: AR,CR
30S ribosomal protein S18 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 563
95 % 19 44 757
90 % 19 44 790
70 % 19 44 830
50 % 19 47 815
40 % 19 47 853
30 % 19 47 838
Entity #19 | Chains: AS,CS
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 139 155
95 % 23 139 201
90 % 23 139 211
70 % 23 152 188
50 % 125 432 30
40 % 125 435 42
30 % 125 435 59
Entity #2 | Chains: AB,CB
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 136 161
95 % 23 136 207
90 % 23 136 217
70 % 23 136 245
50 % 124 419 37
40 % 124 424 47
30 % 124 424 64
Entity #20 | Chains: AT,CT
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 139 156
95 % 23 139 202
90 % 23 139 212
70 % 23 139 235
50 % 23 139 258
40 % 23 153 249
30 % 23 153 257
Entity #21 | Chains: AU,CU
30S ribosomal protein S21 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 601
95 % 19 40 819
90 % 19 40 855
70 % 19 40 887
50 % 19 41 911
40 % 19 41 937
30 % 19 41 918
Entity #22 | Chains: BA,DA
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: BB
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BC,DC
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 146
95 % 23 140 192
90 % 23 140 202
70 % 23 140 226
50 % 83 351 61
40 % 83 351 81
30 % 83 351 92
Entity #25 | Chains: BD,DD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 149 126
95 % 29 149 168
90 % 29 149 178
70 % 29 149 203
50 % 88 355 62
40 % 88 358 76
30 % 88 359 87
Entity #26 | Chains: BE,DE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 132
95 % 23 142 175
90 % 23 142 185
70 % 23 142 210
50 % 23 142 249
40 % 84 352 79
30 % 84 352 90
Entity #27 | Chains: BF
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 148 121
95 % 25 148 165
90 % 25 148 175
70 % 25 148 199
50 % 88 353 57
40 % 88 353 73
30 % 88 353 85
Entity #28 | Chains: BG,DG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 133
95 % 23 142 176
90 % 23 142 186
70 % 23 142 211
50 % 23 142 250
40 % 83 356 72
30 % 155 546 38
Entity #29 | Chains: BH,DH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 133 165
95 % 21 133 220
90 % 21 133 227
70 % 21 133 257
50 % 21 133 280
40 % 72 271 113
30 % 72 279 123
Entity #3 | Chains: AC,CC
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 64 380
95 % 19 64 521
90 % 19 64 550
70 % 19 64 580
50 % 30 109 339
40 % 30 114 339
30 % 30 114 350
Entity #30 | Chains: BI,DI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 141 144
95 % 23 141 189
90 % 23 141 199
70 % 23 141 223
50 % 37 229 148
40 % 37 232 159
30 % 37 235 168
Entity #31 | Chains: BJ,DJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 143 128
95 % 23 143 170
90 % 23 143 180
70 % 23 143 205
50 % 81 324 74
40 % 81 324 95
30 % 81 325 106
Entity #32 | Chains: BK,DK
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 125
95 % 23 144 167
90 % 23 144 177
70 % 23 144 202
50 % 83 363 53
40 % 155 556 20
30 % 155 556 35
Entity #33 | Chains: BL,DL
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 143 127
95 % 23 143 169
90 % 23 143 179
70 % 23 143 204
50 % 82 346 65
40 % 82 346 86
30 % 154 533 39
Entity #34 | Chains: BM,DM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 134 166
95 % 23 142 177
90 % 23 142 187
70 % 23 142 212
50 % 82 354 58
40 % 82 354 74
30 % 82 354 86
Entity #35 | Chains: BN,DN
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 135
95 % 23 142 179
90 % 23 142 189
70 % 23 142 214
50 % 83 326 69
40 % 83 351 70
30 % 83 353 83
Entity #36 | Chains: BO,DO
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 136
95 % 23 142 181
90 % 23 142 191
70 % 23 142 215
50 % 82 348 64
40 % 82 348 83
30 % 82 348 94
Entity #37 | Chains: BP,DP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 138
95 % 23 142 183
90 % 23 142 193
70 % 23 142 217
50 % 81 326 71
40 % 81 326 92
30 % 81 326 103
Entity #38 | Chains: BQ,DQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 143 129
95 % 23 143 171
90 % 23 143 181
70 % 23 143 206
50 % 83 351 59
40 % 83 358 67
30 % 83 358 82
Entity #39 | Chains: BR,DR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 139 154
95 % 23 139 200
90 % 23 139 210
70 % 23 139 234
50 % 23 139 257
40 % 82 346 87
30 % 82 346 98
Entity #4 | Chains: AD,CD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 147
95 % 23 140 193
90 % 23 140 203
70 % 23 140 227
50 % 124 427 32
40 % 124 432 43
30 % 124 432 60
Entity #40 | Chains: BS,DS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 137
95 % 23 142 182
90 % 23 142 192
70 % 23 142 216
50 % 83 325 75
40 % 83 325 96
30 % 83 327 107
Entity #41 | Chains: BT,DT
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 146 119
95 % 23 146 162
90 % 23 146 173
70 % 23 146 196
50 % 23 146 241
40 % 82 352 77
30 % 140 430 62
Entity #42 | Chains: BU,DU
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 145 122
95 % 23 145 166
90 % 23 145 176
70 % 23 145 200
50 % 82 349 63
40 % 82 351 80
30 % 82 351 91
Entity #43 | Chains: BV,DV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 148 116
95 % 24 148 159
90 % 24 148 168
70 % 24 148 193
50 % 25 149 228
40 % 25 149 246
30 % 25 149 255
Entity #44 | Chains: BW,DW
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 143 140
95 % 24 143 185
90 % 24 143 195
70 % 25 172 172
50 % 84 350 60
40 % 84 350 78
30 % 84 350 89
Entity #45 | Chains: BX,DX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 129 167
95 % 23 129 221
90 % 23 129 230
70 % 23 129 264
50 % 23 129 281
40 % 23 129 298
30 % 23 129 305
Entity #46 | Chains: BY,DY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 146 120
95 % 23 146 163
90 % 23 146 174
70 % 23 146 197
50 % 23 146 242
40 % 139 391 54
30 % 140 417 68
Entity #47 | Chains: BZ,DZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 143 131
95 % 23 143 174
90 % 23 143 184
70 % 23 143 208
50 % 24 188 194
40 % 83 352 75
30 % 83 352 88
Entity #48 | Chains: B0,D0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 151
95 % 23 140 197
90 % 23 140 207
70 % 23 140 231
50 % 23 140 254
40 % 82 348 84
30 % 82 348 96
Entity #49 | Chains: B1,D1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 141
95 % 23 142 186
90 % 23 142 196
70 % 23 142 219
50 % 24 163 214
40 % 70 321 97
30 % 70 321 110
Entity #5 | Chains: AE,CE
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 141 143
95 % 23 141 188
90 % 23 141 198
70 % 23 141 222
50 % 125 427 33
40 % 125 427 45
30 % 125 429 63
Entity #50 | Chains: B2,D2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 138 159
95 % 23 138 205
90 % 23 138 215
70 % 24 167 174
50 % 24 190 193
40 % 24 190 206
30 % 24 190 216
Entity #51 | Chains: B3,D3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 138 158
95 % 23 138 204
90 % 23 138 214
70 % 23 138 239
50 % 23 138 262
40 % 83 344 89
30 % 83 344 100
Entity #52 | Chains: B4,D4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 152
95 % 23 140 198
90 % 23 140 208
70 % 23 140 232
50 % 62 299 88
40 % 62 299 110
30 % 62 299 122
Entity #53 | Chains: CA
16S rRNA rna, length: 1530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CG
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 73 343
95 % 21 73 470
90 % 21 73 505
70 % 21 73 542
50 % 124 367 67
40 % 124 372 85
30 % 124 372 97
Entity #55 | Chains: CM
30S ribosomal protein S13 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 144 145
95 % 26 144 190
90 % 26 144 200
70 % 26 144 224
50 % 127 430 34
40 % 127 430 46
30 % 141 546 37
Entity #56 | Chains: CP
30S ribosomal protein S16 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 141 157
95 % 26 141 203
90 % 26 141 213
70 % 26 141 238
50 % 26 141 261
40 % 26 141 273
30 % 127 423 65
Entity #57 | Chains: DB
5S rRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: DF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 148 121
95 % 26 148 165
90 % 26 148 175
70 % 26 148 199
50 % 89 353 57
40 % 89 353 73
30 % 89 353 85
Entity #6 | Chains: AF,CF
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 67 364
95 % 19 67 502
90 % 19 67 534
70 % 19 67 563
50 % 19 67 602
40 % 19 67 640
30 % 130 366 95
Entity #7 | Chains: AG
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 73 343
95 % 22 73 470
90 % 22 73 505
70 % 22 73 542
50 % 125 367 67
40 % 125 372 85
30 % 125 372 97
Entity #8 | Chains: AH,CH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 141 134
95 % 24 141 178
90 % 24 141 188
70 % 24 141 213
50 % 127 432 29
40 % 128 438 40
30 % 143 562 32
Entity #9 | Chains: AI,CI
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 148
95 % 23 140 194
90 % 23 140 204
70 % 23 140 228
50 % 124 421 36
40 % 124 421 48
30 % 138 546 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures