Sequence Similarity Clusters for the Entities in PDB 4V7S

Entity #1 | Chains: AA
16S rRNA rna, length: 1533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 164 150
95 % 25 164 191
90 % 25 164 200
70 % 28 168 193
50 % 143 509 22
40 % 157 649 25
30 % 157 651 39
Entity #11 | Chains: AK,CK
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 161 158
95 % 24 161 199
90 % 24 161 209
70 % 24 161 226
50 % 137 502 29
40 % 153 653 23
30 % 153 653 37
Entity #12 | Chains: AL,CL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 164 154
95 % 25 164 193
90 % 25 164 203
70 % 138 517 14
50 % 138 520 20
40 % 138 520 34
30 % 138 520 55
Entity #13 | Chains: AM
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 165 156
95 % 26 165 197
90 % 26 165 206
70 % 26 165 224
50 % 139 506 28
40 % 139 506 40
30 % 153 654 41
Entity #14 | Chains: AN,CN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 156 168
95 % 24 158 209
90 % 24 158 218
70 % 24 158 232
50 % 24 160 253
40 % 24 166 276
30 % 24 166 287
Entity #15 | Chains: AO,CO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 86 333
95 % 25 163 194
90 % 25 163 204
70 % 25 163 221
50 % 144 514 23
40 % 144 519 32
30 % 144 519 53
Entity #16 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 162 165
95 % 26 162 208
90 % 26 162 217
70 % 26 162 231
50 % 26 162 256
40 % 139 499 43
30 % 139 499 62
Entity #17 | Chains: AQ,CQ
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 161 159
95 % 24 161 200
90 % 24 161 210
70 % 24 161 227
50 % 24 176 231
40 % 24 176 261
30 % 24 178 273
Entity #18 | Chains: AR,CR
30S ribosomal protein S18 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 46 640
95 % 20 46 780
90 % 20 46 808
70 % 20 46 849
50 % 20 50 836
40 % 20 50 872
30 % 20 50 876
Entity #19 | Chains: AS,CS
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 160 163
95 % 24 160 205
90 % 24 160 214
70 % 138 502 16
50 % 138 508 25
40 % 138 511 36
30 % 138 511 58
Entity #2 | Chains: AB,CB
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 157 167
95 % 24 157 212
90 % 24 157 220
70 % 24 157 234
50 % 137 488 36
40 % 137 494 44
30 % 137 494 63
Entity #20 | Chains: AT,CT
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 160 162
95 % 24 160 206
90 % 24 160 215
70 % 24 160 230
50 % 24 160 254
40 % 24 181 256
30 % 24 181 268
Entity #21 | Chains: AU,CU
30S ribosomal protein S21 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 41 717
95 % 20 41 874
90 % 20 41 905
70 % 20 41 950
50 % 20 42 967
40 % 20 42 993
30 % 20 43 962
Entity #22 | Chains: BA,DA
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: BB
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BC,DC
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 146
95 % 24 167 187
90 % 24 167 196
70 % 24 167 215
50 % 94 426 53
40 % 94 426 72
30 % 94 426 84
Entity #25 | Chains: BD,DD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 179 130
95 % 31 179 167
90 % 31 179 175
70 % 31 179 195
50 % 100 430 57
40 % 100 434 66
30 % 100 435 80
Entity #26 | Chains: BE,DE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 170 137
95 % 24 170 175
90 % 24 170 183
70 % 24 170 202
50 % 24 170 239
40 % 95 426 70
30 % 95 426 83
Entity #27 | Chains: BF
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 174 134
95 % 26 174 172
90 % 26 174 179
70 % 26 174 199
50 % 99 422 56
40 % 99 422 76
30 % 99 422 88
Entity #28 | Chains: BG,DG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 169 142
95 % 24 169 182
90 % 24 169 191
70 % 24 169 209
50 % 24 169 242
40 % 94 427 67
30 % 166 652 42
Entity #29 | Chains: BH,DH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 153 176
95 % 22 154 218
90 % 22 154 226
70 % 22 154 248
50 % 22 154 278
40 % 83 332 104
30 % 83 335 119
Entity #3 | Chains: AC,CC
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 82 348
95 % 20 82 442
90 % 20 82 478
70 % 20 82 509
50 % 34 148 275
40 % 34 154 291
30 % 34 154 307
Entity #30 | Chains: BI,DI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 160 166
95 % 24 160 210
90 % 24 160 219
70 % 24 160 233
50 % 38 256 162
40 % 38 259 168
30 % 38 262 184
Entity #31 | Chains: BJ,DJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 171 132
95 % 24 171 170
90 % 24 171 177
70 % 24 171 197
50 % 92 397 67
40 % 92 397 88
30 % 92 398 99
Entity #32 | Chains: BK,DK
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 172 131
95 % 24 172 169
90 % 24 172 176
70 % 24 172 196
50 % 94 437 48
40 % 166 665 24
30 % 166 665 38
Entity #33 | Chains: BL,DL
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 171 136
95 % 24 171 174
90 % 24 171 182
70 % 24 171 201
50 % 93 419 60
40 % 93 419 79
30 % 93 419 91
Entity #34 | Chains: BM,DM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 148
95 % 24 167 189
90 % 24 167 198
70 % 24 167 217
50 % 93 425 54
40 % 93 425 73
30 % 93 425 85
Entity #35 | Chains: BN,DN
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 170 139
95 % 24 170 177
90 % 24 170 185
70 % 24 170 204
50 % 94 421 51
40 % 94 421 65
30 % 94 423 78
Entity #36 | Chains: BO,DO
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 168 143
95 % 24 168 184
90 % 24 168 193
70 % 24 168 211
50 % 93 420 59
40 % 93 420 78
30 % 93 420 90
Entity #37 | Chains: BP,DP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 170 138
95 % 24 170 176
90 % 24 170 184
70 % 24 170 203
50 % 92 399 66
40 % 92 399 87
30 % 92 399 98
Entity #38 | Chains: BQ,DQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 171 133
95 % 24 171 171
90 % 24 171 178
70 % 24 171 198
50 % 94 424 52
40 % 94 432 64
30 % 94 432 77
Entity #39 | Chains: BR,DR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 147
95 % 24 167 188
90 % 24 167 197
70 % 24 167 216
50 % 24 167 247
40 % 93 419 80
30 % 93 419 93
Entity #4 | Chains: AD,CD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 161 161
95 % 24 161 203
90 % 24 161 212
70 % 24 161 229
50 % 137 502 27
40 % 137 508 37
30 % 137 508 59
Entity #40 | Chains: BS,DS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 170 140
95 % 24 170 178
90 % 24 170 186
70 % 24 170 205
50 % 94 394 70
40 % 94 394 89
30 % 94 396 100
Entity #41 | Chains: BT,DT
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 174 127
95 % 24 174 161
90 % 24 174 172
70 % 24 175 189
50 % 24 175 232
40 % 151 505 38
30 % 151 505 60
Entity #42 | Chains: BU,DU
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 173 129
95 % 24 173 165
90 % 24 173 174
70 % 24 173 194
50 % 93 422 58
40 % 93 424 74
30 % 93 424 86
Entity #43 | Chains: BV,DV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 174 126
95 % 25 174 159
90 % 25 174 170
70 % 25 174 190
50 % 26 175 226
40 % 26 175 255
30 % 26 175 267
Entity #44 | Chains: BW,DW
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 170 141
95 % 25 170 181
90 % 25 170 189
70 % 26 199 169
50 % 95 422 55
40 % 95 422 75
30 % 95 422 87
Entity #45 | Chains: BX,DX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 155 170
95 % 24 155 214
90 % 24 155 222
70 % 24 155 239
50 % 24 157 262
40 % 24 157 293
30 % 24 157 308
Entity #46 | Chains: BY,DY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 174 128
95 % 24 174 164
90 % 24 174 173
70 % 24 174 192
50 % 24 174 236
40 % 150 459 59
30 % 151 485 72
Entity #47 | Chains: BZ,DZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 171 135
95 % 24 171 173
90 % 24 171 181
70 % 24 171 200
50 % 25 226 193
40 % 94 425 69
30 % 94 425 82
Entity #48 | Chains: B0,D0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 168 144
95 % 24 168 185
90 % 24 168 194
70 % 24 168 212
50 % 93 410 64
40 % 93 416 81
30 % 93 416 94
Entity #49 | Chains: B1,D1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 145
95 % 24 167 186
90 % 24 167 195
70 % 24 167 213
50 % 25 190 218
40 % 79 389 93
30 % 79 389 104
Entity #5 | Chains: AE,CE
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 162 155
95 % 24 162 196
90 % 24 162 208
70 % 24 162 223
50 % 138 498 32
40 % 138 498 42
30 % 138 500 61
Entity #50 | Chains: B2,D2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 166 149
95 % 24 166 190
90 % 24 166 199
70 % 25 195 170
50 % 25 228 191
40 % 25 228 204
30 % 25 228 228
Entity #51 | Chains: B3,D3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 163 152
95 % 24 163 192
90 % 24 163 202
70 % 24 163 220
50 % 24 163 250
40 % 94 414 82
30 % 94 414 95
Entity #52 | Chains: B4,D4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 164
95 % 23 161 207
90 % 23 161 216
70 % 70 359 51
50 % 70 362 88
40 % 70 362 103
30 % 70 362 118
Entity #53 | Chains: CA
16S rRNA rna, length: 1530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CG
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 91 327
95 % 22 91 412
90 % 22 91 443
70 % 22 91 472
50 % 138 440 62
40 % 138 446 77
30 % 138 446 89
Entity #55 | Chains: CM
30S ribosomal protein S13 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 165 156
95 % 27 165 197
90 % 27 165 206
70 % 27 165 224
50 % 140 506 28
40 % 140 506 40
30 % 154 654 41
Entity #56 | Chains: CP
30S ribosomal protein S16 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 162 165
95 % 27 162 208
90 % 27 162 217
70 % 27 162 231
50 % 27 162 256
40 % 140 499 43
30 % 140 499 62
Entity #57 | Chains: DB
5S rRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: DF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 174 134
95 % 27 174 172
90 % 27 174 179
70 % 27 174 199
50 % 100 422 56
40 % 100 422 76
30 % 100 422 88
Entity #6 | Chains: AF,CF
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 84 339
95 % 20 84 430
90 % 20 84 463
70 % 20 84 494
50 % 20 84 540
40 % 20 84 581
30 % 143 437 92
Entity #7 | Chains: AG
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 91 327
95 % 23 91 412
90 % 23 91 443
70 % 23 91 472
50 % 139 440 62
40 % 139 446 77
30 % 139 446 89
Entity #8 | Chains: AH,CH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 162 153
95 % 25 162 195
90 % 25 162 205
70 % 25 162 222
50 % 140 507 24
40 % 156 670 22
30 % 156 670 36
Entity #9 | Chains: AI,CI
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 161 160
95 % 24 161 201
90 % 24 161 211
70 % 24 161 228
50 % 137 493 34
40 % 137 493 46
30 % 151 652 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures