Sequence Similarity Clusters for the Entities in PDB 4V7S

Entity #1 | Chains: AA
16S rRNA rna, length: 1533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 158 148
95 % 24 158 188
90 % 24 158 197
70 % 27 162 188
50 % 141 490 23
40 % 155 618 22
30 % 155 620 35
Entity #11 | Chains: AK,CK
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 156 156
95 % 23 156 200
90 % 23 156 208
70 % 23 156 223
50 % 135 484 31
40 % 151 623 21
30 % 151 623 34
Entity #12 | Chains: AL,CL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 158 150
95 % 23 158 192
90 % 23 158 200
70 % 135 498 15
50 % 135 501 21
40 % 135 501 35
30 % 135 501 57
Entity #13 | Chains: AM
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 160 154
95 % 25 160 198
90 % 25 160 205
70 % 25 160 222
50 % 137 488 30
40 % 137 488 41
30 % 151 624 38
Entity #14 | Chains: AN,CN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 151 169
95 % 23 153 210
90 % 23 153 217
70 % 23 153 231
50 % 23 155 249
40 % 23 161 270
30 % 23 161 283
Entity #15 | Chains: AO,CO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 84 310
95 % 24 158 193
90 % 24 158 201
70 % 24 158 218
50 % 142 496 24
40 % 142 501 34
30 % 142 501 56
Entity #16 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 157 164
95 % 25 157 208
90 % 25 157 214
70 % 25 157 229
50 % 25 157 252
40 % 137 481 45
30 % 137 481 63
Entity #17 | Chains: AQ,CQ
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 156 157
95 % 23 156 201
90 % 23 156 209
70 % 23 156 224
50 % 23 171 227
40 % 23 171 254
30 % 23 173 264
Entity #18 | Chains: AR,CR
30S ribosomal protein S18 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 669
95 % 19 44 815
90 % 19 44 846
70 % 19 44 888
50 % 19 48 849
40 % 19 48 877
30 % 19 48 873
Entity #19 | Chains: AS,CS
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 155 162
95 % 23 155 204
90 % 23 155 212
70 % 136 484 16
50 % 136 490 28
40 % 136 493 37
30 % 136 493 58
Entity #2 | Chains: AB,CB
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 152 167
95 % 23 152 211
90 % 23 152 218
70 % 23 152 233
50 % 135 470 34
40 % 135 476 46
30 % 135 476 64
Entity #20 | Chains: AT,CT
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 155 161
95 % 23 155 205
90 % 23 155 213
70 % 23 155 227
50 % 23 155 250
40 % 23 176 248
30 % 23 176 260
Entity #21 | Chains: AU,CU
30S ribosomal protein S21 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 715
95 % 19 40 879
90 % 19 40 907
70 % 19 40 942
50 % 19 41 962
40 % 19 41 983
30 % 19 42 955
Entity #22 | Chains: BA,DA
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: BB
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BC,DC
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 145
95 % 23 161 185
90 % 23 161 192
70 % 23 161 213
50 % 92 404 43
40 % 92 404 64
30 % 92 404 79
Entity #25 | Chains: BD,DD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 172 125
95 % 29 172 163
90 % 29 172 171
70 % 29 172 193
50 % 97 407 48
40 % 97 411 59
30 % 97 412 74
Entity #26 | Chains: BE,DE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 164 136
95 % 23 164 176
90 % 23 164 184
70 % 23 164 206
50 % 23 164 236
40 % 93 404 63
30 % 93 404 78
Entity #27 | Chains: BF
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 168 130
95 % 25 168 170
90 % 25 168 178
70 % 25 168 201
50 % 97 402 44
40 % 97 402 65
30 % 97 402 80
Entity #28 | Chains: BG,DG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 163 140
95 % 23 163 179
90 % 23 163 188
70 % 23 163 208
50 % 23 163 239
40 % 92 407 57
30 % 164 614 41
Entity #29 | Chains: BH,DH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 149 173
95 % 21 149 217
90 % 21 149 226
70 % 21 149 245
50 % 21 149 269
40 % 81 318 106
30 % 81 321 117
Entity #3 | Chains: AC,CC
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 78 354
95 % 19 78 448
90 % 19 78 487
70 % 19 78 519
50 % 33 140 279
40 % 33 146 294
30 % 33 146 309
Entity #30 | Chains: BI,DI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 155 163
95 % 23 155 207
90 % 23 155 215
70 % 23 155 228
50 % 37 251 152
40 % 37 254 161
30 % 37 257 177
Entity #31 | Chains: BJ,DJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 127
95 % 23 165 167
90 % 23 165 174
70 % 23 165 198
50 % 90 375 69
40 % 90 375 87
30 % 90 376 100
Entity #32 | Chains: BK,DK
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 166 126
95 % 23 166 164
90 % 23 166 172
70 % 23 166 194
50 % 92 415 38
40 % 164 625 23
30 % 164 625 39
Entity #33 | Chains: BL,DL
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 131
95 % 23 165 171
90 % 23 165 179
70 % 23 165 202
50 % 91 397 58
40 % 91 397 74
30 % 91 397 90
Entity #34 | Chains: BM,DM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 146
95 % 23 161 186
90 % 23 161 195
70 % 23 161 215
50 % 91 403 45
40 % 91 403 66
30 % 91 403 81
Entity #35 | Chains: BN,DN
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 164 133
95 % 23 164 173
90 % 23 164 181
70 % 23 164 204
50 % 92 399 41
40 % 92 399 58
30 % 92 401 72
Entity #36 | Chains: BO,DO
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 162 142
95 % 23 162 181
90 % 23 162 190
70 % 23 162 211
50 % 91 398 53
40 % 91 398 71
30 % 91 398 86
Entity #37 | Chains: BP,DP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 164 132
95 % 23 164 172
90 % 23 164 180
70 % 23 164 203
50 % 90 377 66
40 % 90 377 84
30 % 90 377 97
Entity #38 | Chains: BQ,DQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 129
95 % 23 165 169
90 % 23 165 177
70 % 23 165 199
50 % 92 402 42
40 % 92 410 55
30 % 92 410 71
Entity #39 | Chains: BR,DR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 144
95 % 23 161 183
90 % 23 161 193
70 % 23 161 214
50 % 23 161 241
40 % 91 397 75
30 % 91 397 91
Entity #4 | Chains: AD,CD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 156 160
95 % 23 156 203
90 % 23 156 211
70 % 23 156 226
50 % 135 484 29
40 % 135 490 39
30 % 135 490 59
Entity #40 | Chains: BS,DS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 164 135
95 % 23 164 175
90 % 23 164 183
70 % 23 164 205
50 % 92 372 70
40 % 92 372 88
30 % 92 374 101
Entity #41 | Chains: BT,DT
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 168 123
95 % 23 168 161
90 % 23 168 169
70 % 23 168 186
50 % 23 168 232
40 % 149 482 42
30 % 149 482 61
Entity #42 | Chains: BU,DU
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 167 124
95 % 23 167 162
90 % 23 167 170
70 % 23 167 189
50 % 91 400 49
40 % 91 402 67
30 % 91 402 82
Entity #43 | Chains: BV,DV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 168 122
95 % 24 168 159
90 % 24 168 167
70 % 24 168 185
50 % 25 169 222
40 % 25 169 249
30 % 25 169 261
Entity #44 | Chains: BW,DW
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 164 138
95 % 24 164 178
90 % 24 164 186
70 % 25 193 171
50 % 93 400 47
40 % 93 400 68
30 % 93 400 83
Entity #45 | Chains: BX,DX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 149 170
95 % 23 149 213
90 % 23 149 223
70 % 23 149 238
50 % 23 151 257
40 % 23 151 288
30 % 23 151 300
Entity #46 | Chains: BY,DY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 168 121
95 % 23 168 158
90 % 23 168 166
70 % 23 168 184
50 % 23 168 231
40 % 148 438 52
30 % 149 464 67
Entity #47 | Chains: BZ,DZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 128
95 % 23 165 168
90 % 23 165 176
70 % 23 165 200
50 % 24 217 196
40 % 92 403 61
30 % 92 403 76
Entity #48 | Chains: B0,D0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 162 141
95 % 23 162 180
90 % 23 162 189
70 % 23 162 209
50 % 91 388 64
40 % 91 394 78
30 % 91 394 93
Entity #49 | Chains: B1,D1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 143
95 % 23 161 182
90 % 23 161 191
70 % 23 161 212
50 % 24 184 213
40 % 77 367 96
30 % 77 367 108
Entity #5 | Chains: AE,CE
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 157 152
95 % 23 157 197
90 % 23 157 206
70 % 23 157 221
50 % 136 480 32
40 % 136 480 44
30 % 136 482 60
Entity #50 | Chains: B2,D2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 160 147
95 % 23 160 187
90 % 23 160 196
70 % 24 189 176
50 % 24 219 193
40 % 24 219 205
30 % 24 219 222
Entity #51 | Chains: B3,D3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 157 153
95 % 23 157 196
90 % 23 157 204
70 % 23 157 220
50 % 23 157 244
40 % 92 392 80
30 % 92 392 94
Entity #52 | Chains: B4,D4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 156 155
95 % 23 156 199
90 % 23 156 207
70 % 69 338 50
50 % 69 341 88
40 % 69 341 105
30 % 69 341 118
Entity #53 | Chains: CA
16S rRNA rna, length: 1530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CG
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 88 314
95 % 21 88 398
90 % 21 88 426
70 % 21 88 463
50 % 135 423 56
40 % 135 429 62
30 % 135 429 77
Entity #55 | Chains: CM
30S ribosomal protein S13 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 160 154
95 % 26 160 198
90 % 26 160 205
70 % 26 160 222
50 % 138 488 30
40 % 138 488 41
30 % 152 624 38
Entity #56 | Chains: CP
30S ribosomal protein S16 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 157 164
95 % 26 157 208
90 % 26 157 214
70 % 26 157 229
50 % 26 157 252
40 % 138 481 45
30 % 138 481 63
Entity #57 | Chains: DB
5S rRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: DF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 168 130
95 % 26 168 170
90 % 26 168 178
70 % 26 168 201
50 % 98 402 44
40 % 98 402 65
30 % 98 402 80
Entity #6 | Chains: AF,CF
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 80 346
95 % 19 80 435
90 % 19 80 474
70 % 19 80 506
50 % 19 80 546
40 % 19 80 591
30 % 141 420 84
Entity #7 | Chains: AG
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 88 314
95 % 22 88 398
90 % 22 88 426
70 % 22 88 463
50 % 136 423 56
40 % 136 429 62
30 % 136 429 77
Entity #8 | Chains: AH,CH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 157 149
95 % 24 157 194
90 % 24 157 202
70 % 24 157 219
50 % 138 489 27
40 % 154 640 19
30 % 154 640 33
Entity #9 | Chains: AI,CI
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 156 158
95 % 23 156 202
90 % 23 156 210
70 % 23 156 225
50 % 135 475 33
40 % 135 475 47
30 % 149 622 37

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures