Sequence Similarity Clusters for the Entities in PDB 4V7S

Entity #1 | Chains: AA
16S rRNA rna, length: 1533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 160 147
95 % 25 160 189
90 % 25 160 197
70 % 28 164 192
50 % 142 501 21
40 % 156 638 22
30 % 156 640 37
Entity #11 | Chains: AK,CK
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 158 153
95 % 24 158 196
90 % 24 158 205
70 % 24 158 223
50 % 136 495 28
40 % 152 643 21
30 % 152 643 36
Entity #12 | Chains: AL,CL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 161 150
95 % 25 161 191
90 % 25 161 200
70 % 137 510 14
50 % 137 513 20
40 % 137 513 34
30 % 137 513 55
Entity #13 | Chains: AM
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 162 152
95 % 26 162 195
90 % 26 162 203
70 % 26 162 222
50 % 138 499 27
40 % 138 499 38
30 % 152 644 39
Entity #14 | Chains: AN,CN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 153 165
95 % 24 155 209
90 % 24 155 217
70 % 24 155 231
50 % 24 157 249
40 % 24 163 272
30 % 24 163 284
Entity #15 | Chains: AO,CO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 86 302
95 % 25 160 192
90 % 25 160 201
70 % 25 160 219
50 % 143 507 22
40 % 143 512 33
30 % 143 512 54
Entity #16 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 159 162
95 % 26 159 208
90 % 26 159 216
70 % 26 159 230
50 % 26 159 253
40 % 138 492 42
30 % 138 492 62
Entity #17 | Chains: AQ,CQ
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 158 154
95 % 24 158 197
90 % 24 158 206
70 % 24 158 224
50 % 24 173 227
40 % 24 173 254
30 % 24 175 268
Entity #18 | Chains: AR,CR
30S ribosomal protein S18 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 45 652
95 % 20 45 796
90 % 20 45 828
70 % 20 45 857
50 % 20 49 843
40 % 20 49 870
30 % 20 49 871
Entity #19 | Chains: AS,CS
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 157 161
95 % 24 157 203
90 % 24 157 211
70 % 137 495 15
50 % 137 501 24
40 % 137 504 35
30 % 137 504 57
Entity #2 | Chains: AB,CB
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 154 164
95 % 24 154 210
90 % 24 154 218
70 % 24 154 232
50 % 136 481 34
40 % 136 487 43
30 % 136 487 63
Entity #20 | Chains: AT,CT
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 157 159
95 % 24 157 206
90 % 24 157 214
70 % 24 157 229
50 % 24 157 252
40 % 24 178 250
30 % 24 178 264
Entity #21 | Chains: AU,CU
30S ribosomal protein S21 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 41 701
95 % 20 41 849
90 % 20 41 881
70 % 20 41 928
50 % 20 42 951
40 % 20 42 977
30 % 20 43 945
Entity #22 | Chains: BA,DA
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: BB
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BC,DC
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 164 142
95 % 24 164 183
90 % 24 164 192
70 % 24 164 212
50 % 93 417 42
40 % 93 417 60
30 % 93 417 78
Entity #25 | Chains: BD,DD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 176 125
95 % 31 176 163
90 % 31 176 172
70 % 31 176 190
50 % 99 421 46
40 % 99 425 57
30 % 99 426 75
Entity #26 | Chains: BE,DE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 135
95 % 24 167 175
90 % 24 167 184
70 % 24 167 202
50 % 24 167 237
40 % 94 417 59
30 % 94 417 77
Entity #27 | Chains: BF
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 171 130
95 % 26 171 170
90 % 26 171 179
70 % 26 171 196
50 % 98 415 43
40 % 98 415 61
30 % 98 415 79
Entity #28 | Chains: BG,DG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 166 138
95 % 24 166 177
90 % 24 166 186
70 % 24 166 204
50 % 24 166 238
40 % 93 420 54
30 % 165 635 41
Entity #29 | Chains: BH,DH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 150 173
95 % 22 151 216
90 % 22 151 226
70 % 22 151 244
50 % 22 151 273
40 % 82 326 103
30 % 82 329 117
Entity #3 | Chains: AC,CC
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 80 346
95 % 20 80 437
90 % 20 80 478
70 % 20 80 508
50 % 34 145 271
40 % 34 151 292
30 % 34 151 303
Entity #30 | Chains: BI,DI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 158 158
95 % 24 158 204
90 % 24 158 212
70 % 24 158 227
50 % 38 254 154
40 % 38 257 162
30 % 38 260 180
Entity #31 | Chains: BJ,DJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 168 127
95 % 24 168 167
90 % 24 168 176
70 % 24 168 193
50 % 91 388 62
40 % 91 388 82
30 % 91 389 96
Entity #32 | Chains: BK,DK
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 169 126
95 % 24 169 164
90 % 24 169 173
70 % 24 169 191
50 % 93 428 38
40 % 165 646 24
30 % 165 646 40
Entity #33 | Chains: BL,DL
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 168 131
95 % 24 168 171
90 % 24 168 180
70 % 24 168 197
50 % 92 410 49
40 % 92 410 70
30 % 92 410 86
Entity #34 | Chains: BM,DM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 164 144
95 % 24 164 185
90 % 24 164 194
70 % 24 164 214
50 % 92 416 44
40 % 92 416 62
30 % 92 416 80
Entity #35 | Chains: BN,DN
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 133
95 % 24 167 173
90 % 24 167 182
70 % 24 167 200
50 % 93 412 39
40 % 93 412 55
30 % 93 414 74
Entity #36 | Chains: BO,DO
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 165 140
95 % 24 165 181
90 % 24 165 190
70 % 24 165 208
50 % 92 411 48
40 % 92 411 69
30 % 92 411 85
Entity #37 | Chains: BP,DP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 132
95 % 24 167 172
90 % 24 167 181
70 % 24 167 199
50 % 91 390 61
40 % 91 390 81
30 % 91 390 95
Entity #38 | Chains: BQ,DQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 168 129
95 % 24 168 169
90 % 24 168 178
70 % 24 168 194
50 % 93 415 41
40 % 93 423 53
30 % 93 423 73
Entity #39 | Chains: BR,DR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 164 143
95 % 24 164 184
90 % 24 164 193
70 % 24 164 213
50 % 24 164 242
40 % 92 410 71
30 % 92 410 87
Entity #4 | Chains: AD,CD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 158 156
95 % 24 158 199
90 % 24 158 208
70 % 24 158 226
50 % 136 495 26
40 % 136 501 36
30 % 136 501 58
Entity #40 | Chains: BS,DS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 134
95 % 24 167 174
90 % 24 167 183
70 % 24 167 201
50 % 93 385 67
40 % 93 385 85
30 % 93 387 97
Entity #41 | Chains: BT,DT
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 171 123
95 % 24 171 159
90 % 24 171 167
70 % 24 172 185
50 % 24 172 229
40 % 150 496 39
30 % 150 496 60
Entity #42 | Chains: BU,DU
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 170 124
95 % 24 170 162
90 % 24 170 170
70 % 24 170 188
50 % 92 413 47
40 % 92 415 63
30 % 92 415 81
Entity #43 | Chains: BV,DV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 171 122
95 % 25 171 158
90 % 25 171 166
70 % 25 171 187
50 % 26 172 219
40 % 26 172 249
30 % 26 172 263
Entity #44 | Chains: BW,DW
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 167 136
95 % 25 167 176
90 % 25 167 185
70 % 26 196 166
50 % 94 413 45
40 % 94 413 65
30 % 94 413 82
Entity #45 | Chains: BX,DX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 152 169
95 % 24 152 212
90 % 24 152 221
70 % 24 152 238
50 % 24 154 262
40 % 24 154 293
30 % 24 154 304
Entity #46 | Chains: BY,DY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 171 121
95 % 24 171 157
90 % 24 171 165
70 % 24 171 186
50 % 24 171 231
40 % 149 451 50
30 % 150 477 65
Entity #47 | Chains: BZ,DZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 168 128
95 % 24 168 168
90 % 24 168 177
70 % 24 168 195
50 % 25 221 194
40 % 93 416 58
30 % 93 416 76
Entity #48 | Chains: B0,D0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 165 139
95 % 24 165 178
90 % 24 165 188
70 % 24 165 206
50 % 92 401 60
40 % 92 407 73
30 % 92 407 88
Entity #49 | Chains: B1,D1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 164 141
95 % 24 164 182
90 % 24 164 191
70 % 24 164 209
50 % 25 187 212
40 % 78 380 91
30 % 78 380 103
Entity #5 | Chains: AE,CE
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 159 151
95 % 24 159 194
90 % 24 159 204
70 % 24 159 221
50 % 137 491 30
40 % 137 491 41
30 % 137 493 61
Entity #50 | Chains: B2,D2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 163 145
95 % 24 163 186
90 % 24 163 195
70 % 25 192 173
50 % 25 223 193
40 % 25 223 203
30 % 25 223 222
Entity #51 | Chains: B3,D3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 160 148
95 % 24 160 190
90 % 24 160 199
70 % 24 160 218
50 % 24 160 245
40 % 93 405 78
30 % 93 405 90
Entity #52 | Chains: B4,D4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 158 157
95 % 23 158 201
90 % 23 158 209
70 % 69 350 50
50 % 69 353 86
40 % 69 353 101
30 % 69 353 116
Entity #53 | Chains: CA
16S rRNA rna, length: 1530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CG
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 90 303
95 % 22 90 385
90 % 22 90 412
70 % 22 90 451
50 % 136 434 51
40 % 136 440 67
30 % 136 440 83
Entity #55 | Chains: CM
30S ribosomal protein S13 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 162 152
95 % 27 162 195
90 % 27 162 203
70 % 27 162 222
50 % 139 499 27
40 % 139 499 38
30 % 153 644 39
Entity #56 | Chains: CP
30S ribosomal protein S16 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 159 162
95 % 27 159 208
90 % 27 159 216
70 % 27 159 230
50 % 27 159 253
40 % 139 492 42
30 % 139 492 62
Entity #57 | Chains: DB
5S rRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: DF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 171 130
95 % 27 171 170
90 % 27 171 179
70 % 27 171 196
50 % 99 415 43
40 % 99 415 61
30 % 99 415 79
Entity #6 | Chains: AF,CF
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 82 333
95 % 20 82 420
90 % 20 82 457
70 % 20 82 488
50 % 20 82 539
40 % 20 82 582
30 % 142 431 84
Entity #7 | Chains: AG
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 90 303
95 % 23 90 385
90 % 23 90 412
70 % 23 90 451
50 % 137 434 51
40 % 137 440 67
30 % 137 440 83
Entity #8 | Chains: AH,CH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 159 149
95 % 25 159 193
90 % 25 159 202
70 % 25 159 220
50 % 139 500 23
40 % 155 660 19
30 % 155 660 35
Entity #9 | Chains: AI,CI
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 158 155
95 % 24 158 198
90 % 24 158 207
70 % 24 158 225
50 % 136 486 32
40 % 136 486 44
30 % 150 642 38

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures