Sequence Similarity Clusters for the Entities in PDB 4V7S

Entity #1 | Chains: AA
16S rRNA rna, length: 1533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 143 140
95 % 24 144 176
90 % 24 144 186
70 % 27 148 191
50 % 139 455 25
40 % 139 455 40
30 % 153 572 34
Entity #11 | Chains: AK,CK
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 149
95 % 23 142 197
90 % 23 142 207
70 % 23 142 227
50 % 133 449 33
40 % 149 584 19
30 % 149 584 33
Entity #12 | Chains: AL,CL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 128 174
95 % 23 144 184
90 % 23 144 194
70 % 133 453 17
50 % 133 466 24
40 % 133 466 38
30 % 133 466 57
Entity #13 | Chains: AM
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 146 145
95 % 25 146 193
90 % 25 146 203
70 % 25 146 223
50 % 135 453 32
40 % 135 453 46
30 % 149 573 37
Entity #14 | Chains: AN,CN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 127 168
95 % 23 139 209
90 % 23 139 219
70 % 23 139 240
50 % 23 139 261
40 % 23 145 264
30 % 23 145 275
Entity #15 | Chains: AO,CO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 114 187
95 % 24 144 188
90 % 24 144 198
70 % 24 144 217
50 % 140 461 26
40 % 140 466 37
30 % 140 466 56
Entity #16 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 143 157
95 % 25 143 205
90 % 25 143 215
70 % 25 143 236
50 % 25 143 258
40 % 25 143 271
30 % 135 451 64
Entity #17 | Chains: AQ,CQ
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 150
95 % 23 142 198
90 % 23 142 208
70 % 23 142 228
50 % 23 155 230
40 % 23 155 248
30 % 23 157 255
Entity #18 | Chains: AR,CR
30S ribosomal protein S18 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 572
95 % 19 44 768
90 % 19 44 802
70 % 19 44 845
50 % 19 48 813
40 % 19 48 852
30 % 19 48 842
Entity #19 | Chains: AS,CS
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 141 155
95 % 23 141 203
90 % 23 141 213
70 % 23 154 189
50 % 134 455 28
40 % 134 458 42
30 % 134 458 58
Entity #2 | Chains: AB,CB
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 138 160
95 % 23 138 210
90 % 23 138 220
70 % 23 138 244
50 % 133 441 35
40 % 133 447 47
30 % 133 447 63
Entity #20 | Chains: AT,CT
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 141 156
95 % 23 141 204
90 % 23 141 214
70 % 23 141 235
50 % 23 141 257
40 % 23 155 249
30 % 23 155 259
Entity #21 | Chains: AU,CU
30S ribosomal protein S21 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 40 607
95 % 19 40 836
90 % 19 40 872
70 % 19 40 905
50 % 19 41 921
40 % 19 41 947
30 % 19 42 920
Entity #22 | Chains: BA,DA
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: BB
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BC,DC
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 143 142
95 % 23 143 190
90 % 23 143 200
70 % 23 143 220
50 % 90 370 49
40 % 162 557 22
30 % 162 557 39
Entity #25 | Chains: BD,DD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 152 122
95 % 29 152 169
90 % 29 152 180
70 % 29 152 201
50 % 95 371 57
40 % 95 375 68
30 % 95 376 82
Entity #26 | Chains: BE,DE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 133
95 % 23 144 180
90 % 23 144 190
70 % 23 144 210
50 % 23 144 248
40 % 91 367 75
30 % 91 368 91
Entity #27 | Chains: BF
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 150 120
95 % 25 150 167
90 % 25 150 177
70 % 25 150 198
50 % 95 368 54
40 % 95 368 70
30 % 95 368 85
Entity #28 | Chains: BG,DG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 134
95 % 23 144 181
90 % 23 144 191
70 % 23 144 211
50 % 23 144 249
40 % 90 372 61
30 % 162 570 38
Entity #29 | Chains: BH,DH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 135 164
95 % 21 135 219
90 % 21 135 228
70 % 21 135 256
50 % 21 135 280
40 % 79 286 111
30 % 79 294 120
Entity #3 | Chains: AC,CC
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 65 387
95 % 19 65 528
90 % 19 65 556
70 % 19 65 588
50 % 33 121 310
40 % 33 127 309
30 % 33 127 315
Entity #30 | Chains: BI,DI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 143 144
95 % 23 143 192
90 % 23 143 202
70 % 23 143 222
50 % 37 232 150
40 % 37 235 161
30 % 37 238 168
Entity #31 | Chains: BJ,DJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 145 127
95 % 23 145 173
90 % 23 145 183
70 % 23 145 205
50 % 88 339 71
40 % 88 339 93
30 % 88 340 102
Entity #32 | Chains: BK,DK
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 146 125
95 % 23 146 170
90 % 23 146 181
70 % 23 146 202
50 % 90 379 43
40 % 162 580 20
30 % 162 580 35
Entity #33 | Chains: BL,DL
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 145 126
95 % 23 145 172
90 % 23 145 182
70 % 23 145 204
50 % 89 361 61
40 % 89 361 82
30 % 161 555 41
Entity #34 | Chains: BM,DM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 137 165
95 % 23 145 174
90 % 23 145 184
70 % 23 145 206
50 % 89 371 48
40 % 89 371 65
30 % 89 371 81
Entity #35 | Chains: BN,DN
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 136
95 % 23 144 183
90 % 23 144 193
70 % 23 144 213
50 % 90 341 66
40 % 90 367 60
30 % 90 369 76
Entity #36 | Chains: BO,DO
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 137
95 % 23 144 185
90 % 23 144 195
70 % 23 144 214
50 % 89 364 58
40 % 89 364 79
30 % 89 364 93
Entity #37 | Chains: BP,DP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 139
95 % 23 144 187
90 % 23 144 197
70 % 23 144 216
50 % 88 341 69
40 % 88 341 91
30 % 88 341 101
Entity #38 | Chains: BQ,DQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 145 129
95 % 23 145 175
90 % 23 145 185
70 % 23 145 207
50 % 90 366 55
40 % 90 374 58
30 % 90 374 75
Entity #39 | Chains: BR,DR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 141 154
95 % 23 141 202
90 % 23 141 212
70 % 23 141 234
50 % 23 141 256
40 % 89 361 83
30 % 89 361 95
Entity #4 | Chains: AD,CD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 147
95 % 23 142 195
90 % 23 142 205
70 % 23 142 225
50 % 133 449 29
40 % 133 455 43
30 % 133 455 59
Entity #40 | Chains: BS,DS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 138
95 % 23 144 186
90 % 23 144 196
70 % 23 144 215
50 % 90 340 72
40 % 90 340 95
30 % 90 342 104
Entity #41 | Chains: BT,DT
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 148 118
95 % 23 148 163
90 % 23 148 173
70 % 23 148 196
50 % 23 148 241
40 % 89 367 74
30 % 147 446 65
Entity #42 | Chains: BU,DU
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 147 121
95 % 23 147 168
90 % 23 147 178
70 % 23 147 200
50 % 89 364 59
40 % 89 366 76
30 % 89 366 92
Entity #43 | Chains: BV,DV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 150 117
95 % 24 150 162
90 % 24 150 172
70 % 24 150 194
50 % 25 151 226
40 % 25 151 244
30 % 25 151 254
Entity #44 | Chains: BW,DW
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 146 130
95 % 24 146 177
90 % 24 146 187
70 % 25 175 173
50 % 91 366 56
40 % 91 366 72
30 % 91 366 89
Entity #45 | Chains: BX,DX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 131 166
95 % 23 131 222
90 % 23 131 232
70 % 23 131 259
50 % 23 131 285
40 % 23 131 303
30 % 23 131 309
Entity #46 | Chains: BY,DY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 148 119
95 % 23 148 164
90 % 23 148 174
70 % 23 148 197
50 % 23 148 242
40 % 146 406 53
30 % 147 432 67
Entity #47 | Chains: BZ,DZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 145 131
95 % 23 145 178
90 % 23 145 188
70 % 23 145 208
50 % 24 190 198
40 % 90 367 73
30 % 90 367 90
Entity #48 | Chains: B0,D0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 151
95 % 23 142 199
90 % 23 142 209
70 % 23 142 230
50 % 23 142 255
40 % 89 363 80
30 % 89 363 94
Entity #49 | Chains: B1,D1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 144 141
95 % 23 144 189
90 % 23 144 199
70 % 23 144 218
50 % 24 165 216
40 % 77 337 97
30 % 77 337 106
Entity #5 | Chains: AE,CE
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 143 143
95 % 23 143 191
90 % 23 143 201
70 % 23 143 221
50 % 134 450 31
40 % 134 450 45
30 % 134 452 61
Entity #50 | Chains: B2,D2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 159
95 % 23 140 207
90 % 23 140 217
70 % 24 169 176
50 % 24 192 195
40 % 24 192 210
30 % 24 192 220
Entity #51 | Chains: B3,D3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 140 158
95 % 23 140 206
90 % 23 140 216
70 % 23 140 237
50 % 23 140 259
40 % 90 359 84
30 % 90 359 97
Entity #52 | Chains: B4,D4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 152
95 % 23 142 200
90 % 23 142 210
70 % 23 142 231
50 % 69 315 87
40 % 69 315 106
30 % 69 315 119
Entity #53 | Chains: CA
16S rRNA rna, length: 1530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CG
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 74 353
95 % 21 74 477
90 % 21 74 513
70 % 21 74 551
50 % 133 388 60
40 % 133 394 71
30 % 133 394 87
Entity #55 | Chains: CM
30S ribosomal protein S13 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 146 145
95 % 26 146 193
90 % 26 146 203
70 % 26 146 223
50 % 136 453 32
40 % 136 453 46
30 % 150 573 37
Entity #56 | Chains: CP
30S ribosomal protein S16 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 143 157
95 % 26 143 205
90 % 26 143 215
70 % 26 143 236
50 % 26 143 258
40 % 26 143 271
30 % 136 451 64
Entity #57 | Chains: DB
5S rRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: DF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 150 120
95 % 26 150 167
90 % 26 150 177
70 % 26 150 198
50 % 96 368 54
40 % 96 368 70
30 % 96 368 85
Entity #6 | Chains: AF,CF
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 67 376
95 % 19 67 511
90 % 19 67 541
70 % 19 67 573
50 % 19 67 611
40 % 19 67 650
30 % 139 386 88
Entity #7 | Chains: AG
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 74 353
95 % 22 74 477
90 % 22 74 513
70 % 22 74 551
50 % 134 388 60
40 % 134 394 71
30 % 134 394 87
Entity #8 | Chains: AH,CH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 143 135
95 % 24 143 182
90 % 24 143 192
70 % 24 143 212
50 % 136 454 27
40 % 137 461 39
30 % 152 589 32
Entity #9 | Chains: AI,CI
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 142 148
95 % 23 142 196
90 % 23 142 206
70 % 23 142 226
50 % 133 443 34
40 % 133 444 48
30 % 147 573 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures