Sequence Similarity Clusters for the Entities in PDB 4UBP

Entity #1 | Chains: A
PROTEIN (UREASE (CHAIN A)) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 7634
95 % 5 13 5334 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 5 13 5352
70 % 5 44 1278
50 % 5 46 1089
40 % 5 46 1098
30 % 5 46 1079
Entity #2 | Chains: B
PROTEIN (UREASE (CHAIN B)) protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 13 4513
95 % 5 13 5313 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 5 13 5333
70 % 5 13 5236
50 % 5 13 5008
40 % 5 13 4739
30 % 5 13 4330
Entity #3 | Chains: C
PROTEIN (UREASE (CHAIN C)) protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 7879
95 % 5 13 5104 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 5 13 5116
70 % 5 13 4997
50 % 5 49 932
40 % 5 49 962
30 % 5 49 941

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures