Sequence Similarity Clusters for the Entities in PDB 4QIL

Entity #1 | Chains: A,B
Roquin-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18519
95 % 2 2 16519 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.1
PDBFlex
90 % 2 2 16182
70 % 3 4 9436
50 % 3 4 8563
40 % 3 4 7849
30 % 3 4 6926
Entity #2 | Chains: C,D
5'-R(*CP*UP*CP*CP*CP*UP*UP*CP*UP*GP*UP*GP*AP*AP*GP*GP*GP*GP*A)-3' rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.