Sequence Similarity Clusters for the Entities in PDB 4QIK

Entity #1 | Chains: A,B
Roquin-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19392
95 % 1 2 17243 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.1
PDBFlex
90 % 1 2 16902
70 % 1 4 9820
50 % 1 4 8901
40 % 1 4 8151
30 % 1 4 7187
Entity #2 | Chains: C,D
5'-R(*AP*C*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4QIK 1 A, B Roquin-1 ROQ domain (UNP residues 88-407) 9606
2 4Z31 1 A, B Roquin-2 UNP residues 87-404 9606 6.3.2 | Details
3 4QIL 1 A, B Roquin-1 ROQ domain (UNP residues 88-407) 9606
4 4Z30 1 A Roquin-2 9606 6.3.2 | Details