Sequence Similarity Clusters for the Entities in PDB 4QIK

Entity #1 | Chains: A,B
Roquin-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18956
95 % 1 2 16908 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.1
PDBFlex
90 % 1 2 16573
70 % 1 4 9645
50 % 1 4 8746
40 % 1 4 8012
30 % 1 4 7071
Entity #2 | Chains: C,D
5'-R(*AP*C*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.