Sequence Similarity Clusters for the Entities in PDB 4QIK

Entity #1 | Chains: A,B
Roquin-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24324
95 % 1 2 21571 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.1
PDBFlex
90 % 1 2 20928
70 % 1 4 9987
50 % 1 4 9002
40 % 1 4 8158
30 % 1 4 7061
Entity #2 | Chains: C,D
5'-R(*AP*C*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures