Sequence Similarity Clusters for the Entities in PDB 4Q5S

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 44 189
95 % 34 44 250 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 1.4
PDBFlex
90 % 34 44 265
70 % 35 57 228
50 % 35 57 252
40 % 36 93 157
30 % 37 94 168
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 44 461
95 % 34 44 637 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 35 57 461
70 % 35 57 500
50 % 38 71 494
40 % 38 71 532
30 % 38 71 529
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 44 460
95 % 34 44 636 Flexibility: Medium
Max RMSD: 11.0, Avg RMSD: 6.5
PDBFlex
90 % 35 54 472
70 % 35 54 514
50 % 35 54 573
40 % 35 54 614
30 % 35 54 601
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 756
95 % 34 44 645 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 35 56 481
70 % 35 56 525
50 % 35 56 581
40 % 35 56 616
30 % 35 56 606
Entity #5 | Chains: F
RNA polymerase sigma factor SigA protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 22 1370
95 % 31 35 938 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 2.5
PDBFlex
90 % 31 35 974
70 % 31 36 987
50 % 31 36 1028
40 % 34 50 849
30 % 34 50 833
Entity #6 | Chains: G
DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: H
DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3') dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: I
RNA (5'-R(P*CP*UP*CP*AP*C)-3') rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.