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Thermus thermophilus RNA polymerase initially transcribing complex containing 6-mer RNA
Sequence Clustering and Redundancy Reduction Results
4Q5S
Sequence Clusters for the Sequence Entities in PDB 4Q5S
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 32 183
95% 24 32 250
90% 24 32 262
70% 24 39 222
50% 24 39 268
40% 25 54 200
30% 26 55 215
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 32 418
95% 24 32 600
90% 24 39 532
70% 24 39 576
50% 24 39 644
40% 24 39 680
30% 24 39 686
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1524 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 32 417
95% 24 32 599
90% 24 36 546
70% 24 36 592
50% 24 36 669
40% 24 36 694
30% 24 36 699
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 21 856
95% 24 32 627
90% 24 38 561
70% 24 38 607
50% 24 38 682
40% 24 38 710
30% 24 38 711
Entity #5: Chains: F - RNA polymerase sigma factor SigA protein, length: 423 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 13 2237
95% 21 23 1111
90% 21 23 1127
70% 21 24 1122
50% 21 24 1185
40% 21 24 1210
30% 21 24 1187
Entity #6: Chains: G - DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: H - DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3') dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: I - RNA (5'-R(P*CP*UP*CP*AP*C)-3') rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.