Sequence Similarity Clusters for the Entities in PDB 4Q5S

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 44 181
95 % 34 44 242
90 % 34 44 256
70 % 35 57 200
50 % 35 57 241
40 % 36 92 153
30 % 37 93 167
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 44 456
95 % 34 44 628
90 % 35 57 449
70 % 35 57 486
50 % 38 71 487
40 % 38 71 521
30 % 38 71 521
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 44 455
95 % 34 44 627
90 % 35 54 457
70 % 35 54 496
50 % 35 54 559
40 % 35 54 600
30 % 35 54 589
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 31 742
95 % 34 44 637
90 % 35 56 469
70 % 35 56 507
50 % 35 56 569
40 % 35 56 606
30 % 35 56 597
Entity #5 | Chains: F
RNA polymerase sigma factor SigA protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 22 1339
95 % 31 35 925
90 % 31 35 956
70 % 31 36 972
50 % 31 36 1013
40 % 34 50 834
30 % 34 50 821
Entity #6 | Chains: G
DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: H
DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3') dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: I
RNA (5'-R(P*CP*UP*CP*AP*C)-3') rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.