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RPase in complex with DNA and RNA
Sequence Clustering and Redundancy Reduction Results
4Q5S
Sequence Clusters for the Sequence Entities in PDB 4Q5S
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 30 192
95% 24 30 272
90% 24 30 283
70% 24 37 227
50% 24 37 268
40% 24 48 210
30% 25 49 228
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 30 439
95% 24 30 634
90% 24 37 568
70% 24 37 603
50% 24 37 642
40% 24 37 669
30% 24 37 669
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1524 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 30 438
95% 24 30 633
90% 24 34 574
70% 24 34 607
50% 24 34 652
40% 24 34 677
30% 24 34 680
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 19 937
95% 24 30 650
90% 24 36 586
70% 24 36 619
50% 24 36 672
40% 24 36 695
30% 24 36 696
Entity #5: Chains: F - RNA polymerase sigma factor SigA protein, length: 423 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 13 2033
95% 21 23 972
90% 21 23 996
70% 21 24 985
50% 21 24 1061
40% 21 24 1087
30% 21 24 1065
Entity #6: Chains: G - DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: H - DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3') dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: I - RNA (5'-R(P*CP*UP*CP*AP*C)-3') rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.