Sequence Similarity Clusters for the Entities in PDB 4Q4Z

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 42 184
95 % 26 42 252 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 1.4
PDBFlex
90 % 26 42 264
70 % 27 55 223
50 % 27 55 250
40 % 27 89 155
30 % 28 90 171
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 42 453
95 % 26 42 631 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.8
PDBFlex
90 % 27 55 461
70 % 27 55 496
50 % 29 68 488
40 % 29 68 526
30 % 29 68 527
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 42 452
95 % 26 42 630 Flexibility: Medium
Max RMSD: 11.0, Avg RMSD: 6.4
PDBFlex
90 % 27 52 477
70 % 27 52 511
50 % 27 52 567
40 % 27 52 609
30 % 27 52 603
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 29 789
95 % 26 42 642 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 27 54 489
70 % 27 54 520
50 % 27 54 577
40 % 27 54 619
30 % 27 54 614
Entity #5 | Chains: F
RNA polymerase sigma factor SigA protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 1304
95 % 23 33 970 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 2.5
PDBFlex
90 % 23 33 998
70 % 23 34 1014
50 % 23 34 1052
40 % 25 47 878
30 % 25 47 863
Entity #6 | Chains: G
DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: H
DNA (25-MER) dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.