Sequence Similarity Clusters for the Entities in PDB 4Q4Z

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 38 171
95 % 22 38 237
90 % 22 38 248
70 % 22 50 185
50 % 22 50 225
40 % 22 70 177
30 % 23 71 191
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 38 376
95 % 22 38 556
90 % 22 50 415
70 % 22 50 460
50 % 22 50 525
40 % 22 50 562
30 % 22 50 564
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 38 375
95 % 22 38 555
90 % 22 47 422
70 % 22 47 469
50 % 22 47 534
40 % 22 47 571
30 % 22 47 577
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 27 731
95 % 22 38 569
90 % 22 49 429
70 % 22 49 476
50 % 22 49 542
40 % 22 49 581
30 % 22 49 587
Entity #5 | Chains: F
RNA polymerase sigma factor SigA protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 1346
95 % 19 29 949
90 % 19 29 972
70 % 19 30 990
50 % 19 30 1032
40 % 19 30 1052
30 % 19 30 1040
Entity #6 | Chains: G
DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: H
DNA (25-MER) dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.