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Thermus thermophilus RNA polymerase de novo transcription initiation complex
Sequence Clustering and Redundancy Reduction Results
4Q4Z
Sequence Clusters for the Sequence Entities in PDB 4Q4Z
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 32 181
95% 18 32 250
90% 18 32 262
70% 18 39 221
50% 18 39 268
40% 18 54 200
30% 19 55 216
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 32 415
95% 18 32 597
90% 18 39 527
70% 18 39 568
50% 18 39 643
40% 18 39 677
30% 18 39 684
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1524 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 32 414
95% 18 32 596
90% 18 36 542
70% 18 36 588
50% 18 36 665
40% 18 36 690
30% 18 36 695
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 21 855
95% 18 32 622
90% 18 38 558
70% 18 38 603
50% 18 38 677
40% 18 38 705
30% 18 38 706
Entity #5: Chains: F - RNA polymerase sigma factor SigA protein, length: 423 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 13 2232
95% 15 23 1106
90% 15 23 1122
70% 15 24 1116
50% 15 24 1181
40% 15 24 1205
30% 15 24 1182
Entity #6: Chains: G - DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: H - DNA (25-MER) dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.