Sequence Similarity Clusters for the Entities in PDB 4Q4Z

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 35 193
95 % 19 35 269
90 % 19 35 281
70 % 19 47 196
50 % 19 47 242
40 % 19 67 185
30 % 20 68 199
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 35 443
95 % 19 35 651
90 % 19 47 448
70 % 19 47 502
50 % 19 47 581
40 % 19 47 612
30 % 19 47 621
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 35 442
95 % 19 35 650
90 % 19 44 454
70 % 19 44 512
50 % 19 44 589
40 % 19 44 624
30 % 19 44 633
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 870
95 % 19 35 681
90 % 19 46 460
70 % 19 46 517
50 % 19 46 599
40 % 19 46 636
30 % 19 46 640
Entity #5 | Chains: F
RNA polymerase sigma factor SigA protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 16 1906
95 % 16 26 1108
90 % 16 26 1127
70 % 16 27 1131
50 % 16 27 1176
40 % 16 27 1193
30 % 16 27 1169
Entity #6 | Chains: G
DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: H
DNA (25-MER) dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.