Sequence Similarity Clusters for the Entities in PDB 4Q4Z

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 45 188
95 % 26 45 251 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 1.4
PDBFlex
90 % 26 45 268
70 % 27 58 220
50 % 27 58 252
40 % 27 95 156
30 % 28 96 166
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 45 451
95 % 26 45 627 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 27 58 497
70 % 27 58 533
50 % 29 72 495
40 % 29 72 538
30 % 29 72 533
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 45 450
95 % 26 45 626 Flexibility: Medium
Max RMSD: 11.0, Avg RMSD: 6.5
PDBFlex
90 % 27 55 501
70 % 27 55 540
50 % 27 55 573
40 % 27 55 611
30 % 27 55 600
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 32 753
95 % 26 45 643 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 27 57 507
70 % 27 57 545
50 % 27 57 580
40 % 27 57 618
30 % 27 57 605
Entity #5 | Chains: F
RNA polymerase sigma factor SigA protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 1351
95 % 23 36 946 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 2.5
PDBFlex
90 % 23 36 977
70 % 23 37 979
50 % 23 37 1029
40 % 25 51 838
30 % 25 51 825
Entity #6 | Chains: G
DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: H
DNA (25-MER) dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures