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Crystal structure of HIV-1 reverse transcriptase in complex with bulge-RNA/DNA and Nevirapine
Sequence Clustering and Redundancy Reduction Results
4PWD
Sequence Clusters for the Sequence Entities in PDB 4PWD
Entity #1: Chains: A,C - HIV-1 Reverse Transcriptase, P66 subunit protein, length: 556 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 2470
95% 147 210 78
90% 147 210 82
70% 147 210 104
50% 148 211 142
40% 148 211 155
30% 148 211 171
Entity #2: Chains: B,D - HIV-1 Reverse Transcriptase, P51 subunit protein, length: 428 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 74 241
95% 142 204 87
90% 142 204 92
70% 142 204 113
50% 143 205 148
40% 143 205 162
30% 143 205 181
Entity #3: Chains: E,T - 5'-R(*AP*UP*GP*GP*UP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*AP*CP*AP*GP*GP*GP*AP*CP*UP*GP*U)-3' rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F,P - 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*G)-3' dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.