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Crystal structure of HIV-1 reverse transcriptase in complex with bulge-RNA/DNA and Nevirapine
Sequence Clustering and Redundancy Reduction Results
4PWD
Sequence Clusters for the Sequence Entities in PDB 4PWD
Entity #1: Chains: A,C - HIV-1 Reverse Transcriptase, P66 subunit protein, length: 556 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 2588
95% 140 200 60
90% 140 200 63
70% 140 200 76
50% 141 201 114
40% 141 201 138
30% 141 201 159
Entity #2: Chains: B,D - HIV-1 Reverse Transcriptase, P51 subunit protein, length: 428 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 65 257
95% 135 194 68
90% 135 194 72
70% 135 194 86
50% 136 195 117
40% 136 195 146
30% 136 195 170
Entity #3: Chains: E,T - 5'-R(*AP*UP*GP*GP*UP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*AP*CP*AP*GP*GP*GP*AP*CP*UP*GP*U)-3' rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F,P - 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*G)-3' dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.