Sequence Similarity Clusters for the Entities in PDB 4PWD

Entity #1 | Chains: A,C
HIV-1 Reverse Transcriptase, P66 subunit protein, length: 556 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 2831
95 % 158 228 106
90 % 158 228 110
70 % 158 228 126
50 % 159 229 153
40 % 159 229 169
30 % 159 229 185
Entity #2 | Chains: B,D
HIV-1 Reverse Transcriptase, P51 subunit protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 85 220
95 % 153 222 113
90 % 153 222 118
70 % 153 222 136
50 % 154 223 162
40 % 154 223 176
30 % 154 223 192
Entity #3 | Chains: E,T
5'-R(*AP*UP*GP*GP*UP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*AP*CP*AP*GP*GP*GP*AP*CP*UP*GP*U)-3' rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*G)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.