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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of HIV-1 reverse transcriptase in complex with bulge-RNA/DNA and Nevirapine
Sequence Clustering and Redundancy Reduction Results
4PWD
Sequence Clusters for the Sequence Entities in PDB 4PWD
Entity #1: Chains: A,C - HIV-1 Reverse Transcriptase, P66 subunit protein, length: 556 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 7 2753
95% 142 202 63
90% 142 202 66
70% 142 202 83
50% 143 203 118
40% 143 203 141
30% 143 203 164
Entity #2: Chains: B,D - HIV-1 Reverse Transcriptase, P51 subunit protein, length: 428 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 67 252
95% 137 196 69
90% 137 196 73
70% 137 196 90
50% 138 197 121
40% 138 197 148
30% 138 197 175
Entity #3: Chains: E,T - 5'-R(*AP*UP*GP*GP*UP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*AP*CP*AP*GP*GP*GP*AP*CP*UP*GP*U)-3' rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F,P - 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*G)-3' dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.