Sequence Similarity Clusters for the Entities in PDB 4OO8

Entity #1 | Chains: A,D
CRISPR-associated endonuclease Cas9/Csn1 protein, length: 1372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31042
95 % 9 20 2366 Flexibility: High
Max RMSD: 32.8, Avg RMSD: 13.5
PDBFlex
90 % 9 20 2432
70 % 9 20 2436
50 % 9 20 2413
40 % 9 20 2389
30 % 9 20 2275
Entity #2 | Chains: B,E
RNA (97-MER) rna, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
DNA (5'-D(*CP*CP*AP*GP*CP*CP*AP*AP*GP*CP*GP*CP*AP*CP*CP*TP*AP*AP*TP*TP*TP*CP*C)-3') dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures