Sequence Similarity Clusters for the Entities in PDB 4OO1

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6967
95 % 6 9 7498 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 2.0
PDBFlex
90 % 6 9 7452
70 % 6 9 7232
50 % 6 9 6668
40 % 6 9 6207
30 % 6 9 5556
Entity #10 | Chains: J
Exosome complex exonuclease RRP6 protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 24616
95 % 3 3 20945
90 % 3 3 20360
70 % 3 3 18749
50 % 3 3 16319
40 % 3 3 14589
30 % 3 3 12519
Entity #11 | Chains: S
POLY A RNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8693
95 % 6 9 7564
90 % 6 9 7522
70 % 6 9 7296
50 % 6 9 6726
40 % 6 9 6256
30 % 33 41 486
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25185
95 % 5 8 8349 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 5 8 8291
70 % 5 8 7965
50 % 5 8 7289
40 % 5 8 6770
30 % 5 8 6019
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 8727
95 % 5 8 8986 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 8 8903
70 % 5 8 8521
50 % 5 8 7719
40 % 5 8 7106
30 % 5 8 6271
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26272
95 % 5 8 8852 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 5 8 8776
70 % 5 8 8413
50 % 5 8 7637
40 % 5 8 7034
30 % 5 8 6219
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26556
95 % 5 8 8960 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 5 8 8880
70 % 5 8 8501
50 % 5 8 7704
40 % 5 8 7092
30 % 5 8 6262
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 8736
95 % 5 8 8994 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 5 8 8912
70 % 5 8 8528
50 % 5 8 7724
40 % 5 8 7110
30 % 5 8 6275
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 9958
95 % 4 7 9999 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 4 7 9887
70 % 4 7 9389
50 % 4 7 8520
40 % 4 7 7814
30 % 4 7 6900
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8406
95 % 5 8 8717
90 % 5 8 8649
70 % 5 8 8306
50 % 5 8 7549
40 % 5 8 6961
30 % 5 8 6169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.