Sequence Similarity Clusters for the Entities in PDB 4OO1

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 4090
95 % 7 11 4899
90 % 7 11 4927
70 % 7 11 4823
50 % 7 11 4598
40 % 7 11 4361
30 % 7 11 4020
Entity #10 | Chains: J
Exosome complex exonuclease RRP6 protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26159
95 % 3 3 22200 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 3 3 21546
70 % 3 3 19768
50 % 3 3 17160
40 % 3 3 15310
30 % 3 3 13140
Entity #11 | Chains: S
POLY A RNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 4513
95 % 7 11 4953 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 7 11 4980
70 % 7 11 4874
50 % 7 11 4653
40 % 7 11 4411
30 % 34 43 491
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26743
95 % 6 10 5233 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 6 10 5258
70 % 6 10 5140
50 % 6 10 4904
40 % 6 10 4641
30 % 6 10 4260
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 4515
95 % 6 10 5315 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 10 5343
70 % 6 10 5235
50 % 6 10 4991
40 % 6 10 4713
30 % 6 10 4317
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27862
95 % 6 10 5292 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 6 10 5321
70 % 6 10 5212
50 % 6 10 4975
40 % 6 10 4698
30 % 6 10 4306
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28158
95 % 6 10 5310 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 6 10 5338
70 % 6 10 5230
50 % 6 10 4988
40 % 6 10 4712
30 % 6 10 4316
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 4517
95 % 6 10 5317 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.3
PDBFlex
90 % 6 10 5345
70 % 6 10 5237
50 % 6 10 4992
40 % 6 10 4714
30 % 6 10 4318
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 8592
95 % 4 8 8960 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 4 8 8886
70 % 4 8 8540
50 % 4 8 7784
40 % 4 8 7204
30 % 4 8 6398
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 4469
95 % 6 10 5273 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.5
PDBFlex
90 % 6 10 5302
70 % 6 10 5187
50 % 6 10 4957
40 % 6 10 4683
30 % 6 10 4291

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures