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Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
Sequence Clustering and Redundancy Reduction Results
4OO1
Sequence Clusters for the Sequence Entities in PDB 4OO1
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 305 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 20700
95% 3 3 17497
90% 3 3 17055
70% 3 3 15833
50% 3 3 13888
40% 3 3 12484
30% 3 3 10760
Entity #10: Chains: J - Exosome complex exonuclease RRP6 protein, length: 560 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40361
95% 1 1 30079
90% 1 1 28902
70% 1 1 26005
50% 1 1 22490
40% 1 1 20020
30% 1 1 17132
Entity #11: Chains: S - POLY A RNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30302
95% 3 3 17868
90% 3 3 17405
70% 3 3 16142
50% 3 3 14155
40% 3 3 12712
30% 30 35 377
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 394 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42267
95% 2 2 21221
90% 2 2 20578
70% 2 2 18874
50% 2 2 16426
40% 2 2 14662
30% 2 2 12586
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30512
95% 2 2 23667
90% 2 2 22929
70% 2 2 20896
50% 2 2 18054
40% 2 2 15988
30% 2 2 13586
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 269 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45729
95% 2 2 23175
90% 2 2 22457
70% 2 2 20500
50% 2 2 17733
40% 2 2 15720
30% 2 2 13367
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46528
95% 2 2 23549
90% 2 2 22815
70% 2 2 20800
50% 2 2 17976
40% 2 2 15918
30% 2 2 13528
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 244 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30552
95% 2 2 23691
90% 2 2 22953
70% 2 2 20917
50% 2 2 18073
40% 2 2 16004
30% 2 2 13600
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 363 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 26895
95% 2 2 21597
90% 2 2 20944
70% 2 2 19197
50% 2 2 16701
40% 2 2 14862
30% 2 2 12731
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 296 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 28631
95% 2 2 22603
90% 2 2 21910
70% 2 2 20011
50% 2 2 17350
40% 2 2 15394
30% 2 2 13118
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.