Sequence Similarity Clusters for the Entities in PDB 4OO1

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 8235
95 % 5 8 8537 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 2.0
PDBFlex
90 % 5 8 8473
70 % 5 8 8147
50 % 5 8 7415
40 % 5 8 6839
30 % 5 8 6060
Entity #10 | Chains: J
Exosome complex exonuclease RRP6 protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 30256
95 % 2 2 24765
90 % 2 2 23962
70 % 2 2 21902
50 % 2 2 18995
40 % 2 2 16925
30 % 2 2 14540
Entity #11 | Chains: S
POLY A RNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 9988
95 % 5 8 8793 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 5 8 8716
70 % 5 8 8349
50 % 5 8 7577
40 % 5 8 6975
30 % 32 40 486
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32454
95 % 4 7 9796 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 4 7 9682
70 % 4 7 9202
50 % 4 7 8350
40 % 4 7 7660
30 % 4 7 6763
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 9997
95 % 4 7 10008 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 7 9892
70 % 4 7 9409
50 % 4 7 8550
40 % 4 7 7833
30 % 4 7 6901
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36342
95 % 4 7 9963 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 4 7 9851
70 % 4 7 9372
50 % 4 7 8519
40 % 4 7 7801
30 % 4 7 6879
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37179
95 % 4 7 9998 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 4 7 9883
70 % 4 7 9402
50 % 4 7 8543
40 % 4 7 7825
30 % 4 7 6895
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 10001
95 % 4 7 10012 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 4 7 9896
70 % 4 7 9413
50 % 4 7 8552
40 % 4 7 7835
30 % 4 7 6903
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 11374
95 % 3 6 11151 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 3 6 11001
70 % 3 6 10400
50 % 3 6 9398
40 % 3 6 8564
30 % 3 6 7507
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 9883
95 % 4 7 9911 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 4.0
PDBFlex
90 % 4 7 9801
70 % 4 7 9319
50 % 4 7 8461
40 % 4 7 7752
30 % 4 7 6840

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.