Sequence Similarity Clusters for the Entities in PDB 4OO1

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8079
95 % 5 8 8382
90 % 5 8 8318
70 % 5 8 8010
50 % 5 8 7304
40 % 5 8 6734
30 % 5 8 5966
Entity #10 | Chains: J
Exosome complex exonuclease RRP6 protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29736
95 % 2 2 24336
90 % 2 2 23553
70 % 2 2 21543
50 % 2 2 18718
40 % 2 2 16683
30 % 2 2 14344
Entity #11 | Chains: S
POLY A RNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9800
95 % 5 8 8634
90 % 5 8 8559
70 % 5 8 8210
50 % 5 8 7466
40 % 5 8 6871
30 % 32 40 478
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 31889
95 % 4 7 9617
90 % 4 7 9503
70 % 4 7 9042
50 % 4 7 8222
40 % 4 7 7540
30 % 4 7 6663
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9809
95 % 4 7 9827
90 % 4 7 9712
70 % 4 7 9244
50 % 4 7 8417
40 % 4 7 7708
30 % 4 7 6802
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35738
95 % 4 7 9782
90 % 4 7 9670
70 % 4 7 9207
50 % 4 7 8386
40 % 4 7 7678
30 % 4 7 6780
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36576
95 % 4 7 9816
90 % 4 7 9702
70 % 4 7 9237
50 % 4 7 8410
40 % 4 7 7700
30 % 4 7 6796
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9813
95 % 4 7 9831
90 % 4 7 9716
70 % 4 7 9248
50 % 4 7 8419
40 % 4 7 7710
30 % 4 7 6804
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 11154
95 % 3 6 10939
90 % 3 6 10796
70 % 3 6 10217
50 % 3 6 9256
40 % 3 6 8430
30 % 3 6 7402
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9698
95 % 4 7 9732
90 % 4 7 9622
70 % 4 7 9157
50 % 4 7 8330
40 % 4 7 7631
30 % 4 7 6741

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.