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Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
Sequence Clustering and Redundancy Reduction Results
4OO1
Sequence Clusters for the Sequence Entities in PDB 4OO1
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 305 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 19775
95% 3 3 16786
90% 3 3 16369
70% 3 3 15172
50% 3 3 13320
40% 3 3 11971
30% 3 3 10332
Entity #10: Chains: J - Exosome complex exonuclease RRP6 protein, length: 560 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 38445
95% 1 1 28709
90% 1 1 27622
70% 1 1 24950
50% 1 1 21634
40% 1 1 19264
30% 1 1 16488
Entity #11: Chains: S - POLY A RNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 28873
95% 3 3 17140
90% 3 3 16701
70% 3 3 15467
50% 3 3 13577
40% 3 3 12194
30% 30 35 359
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 394 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40250
95% 2 2 20300
90% 2 2 19695
70% 2 2 18060
50% 2 2 15755
40% 2 2 14069
30% 2 2 12091
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29078
95% 2 2 22616
90% 2 2 21931
70% 2 2 20009
50% 2 2 17341
40% 2 2 15359
30% 2 2 13060
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 269 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43569
95% 2 2 22165
90% 2 2 21493
70% 2 2 19632
50% 2 2 17031
40% 2 2 15101
30% 2 2 12846
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44331
95% 2 2 22503
90% 2 2 21820
70% 2 2 19916
50% 2 2 17264
40% 2 2 15290
30% 2 2 13003
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 244 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29115
95% 2 2 22638
90% 2 2 21953
70% 2 2 20029
50% 2 2 17359
40% 2 2 15374
30% 2 2 13073
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 363 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 25665
95% 2 2 20660
90% 2 2 20045
70% 2 2 18366
50% 2 2 16016
40% 2 2 14257
30% 2 2 12225
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 296 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 27297
95% 2 2 21610
90% 2 2 20957
70% 2 2 19143
50% 2 2 16646
40% 2 2 14777
30% 2 2 12599
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.