Sequence Similarity Clusters for the Entities in PDB 4OO1

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 4232
95 % 7 10 5021 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.9
PDBFlex
90 % 7 10 5042
70 % 7 10 4950
50 % 7 10 4747
40 % 7 10 4493
30 % 7 10 4126
Entity #10 | Chains: J
Exosome complex exonuclease RRP6 protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25017
95 % 3 3 21307 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 3 3 20706
70 % 3 3 19014
50 % 3 3 16537
40 % 3 3 14775
30 % 3 3 12677
Entity #11 | Chains: S
POLY A RNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4965
95 % 7 10 5058 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 7 10 5078
70 % 7 10 4993
50 % 7 10 4777
40 % 7 10 4522
30 % 34 42 478
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25590
95 % 6 9 5416 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 6 9 5430
70 % 6 9 5362
50 % 6 9 5084
40 % 6 9 4798
30 % 6 9 4374
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4977
95 % 6 9 5692 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 9 5703
70 % 6 9 5596
50 % 6 9 5279
40 % 6 9 4962
30 % 6 9 4490
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26698
95 % 6 9 5631 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 6 9 5642
70 % 6 9 5546
50 % 6 9 5237
40 % 6 9 4925
30 % 6 9 4470
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26984
95 % 6 9 5683 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 6 9 5693
70 % 6 9 5588
50 % 6 9 5270
40 % 6 9 4956
30 % 6 9 4487
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4979
95 % 6 9 5693 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 6 9 5705
70 % 6 9 5599
50 % 6 9 5283
40 % 6 9 4965
30 % 6 9 4493
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 10081
95 % 4 7 10139 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 4 7 10026
70 % 4 7 9536
50 % 4 7 8639
40 % 4 7 7917
30 % 4 7 6994
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4843
95 % 6 9 5578 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.9
PDBFlex
90 % 6 9 5593
70 % 6 9 5504
50 % 6 9 5200
40 % 6 9 4886
30 % 6 9 4446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.