Sequence Similarity Clusters for the Entities in PDB 4OO1

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 7788
95 % 5 8 8101
90 % 5 8 8046
70 % 5 8 7745
50 % 5 8 7072
40 % 5 8 6545
30 % 5 8 5806
Entity #10 | Chains: J
Exosome complex exonuclease RRP6 protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 28731
95 % 2 2 23505
90 % 2 2 22756
70 % 2 2 20825
50 % 2 2 18101
40 % 2 2 16136
30 % 2 2 13852
Entity #11 | Chains: S
POLY A RNA rna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9497
95 % 5 8 8353
90 % 5 8 8287
70 % 5 8 7948
50 % 5 8 7235
40 % 5 8 6685
30 % 32 40 440
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 30801
95 % 4 7 9321
90 % 4 7 9214
70 % 4 7 8763
50 % 4 7 7976
40 % 4 7 7337
30 % 4 7 6495
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9507
95 % 4 7 9534
90 % 4 7 9429
70 % 4 7 8973
50 % 4 7 8173
40 % 4 7 7507
30 % 4 7 6637
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 34546
95 % 4 7 9486
90 % 4 7 9384
70 % 4 7 8935
50 % 4 7 8142
40 % 4 7 7478
30 % 4 7 6616
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 35365
95 % 4 7 9521
90 % 4 7 9417
70 % 4 7 8966
50 % 4 7 8167
40 % 4 7 7500
30 % 4 7 6632
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9511
95 % 4 7 9538
90 % 4 7 9433
70 % 4 7 8977
50 % 4 7 8175
40 % 4 7 7509
30 % 4 7 6639
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 10807
95 % 3 6 10608
90 % 3 6 10475
70 % 3 6 9911
50 % 3 6 8974
40 % 3 6 8192
30 % 3 6 7209
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 9395
95 % 4 7 9439
90 % 4 7 9337
70 % 4 7 8883
50 % 4 7 8087
40 % 4 7 7429
30 % 4 7 6576

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.