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Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
Sequence Clustering and Redundancy Reduction Results
4OO1
Sequence Clusters for the Sequence Entities in PDB 4OO1
Entity #1: Chains: A - Exosome complex component RRP45 protein, length: 305 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 20201
95% 3 3 17130
90% 3 3 16695
70% 3 3 15467
50% 3 3 13571
40% 3 3 12195
30% 3 3 10521
Entity #10: Chains: J - Exosome complex exonuclease RRP6 protein, length: 560 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39312
95% 1 1 29319
90% 1 1 28186
70% 1 1 25426
50% 1 1 22026
40% 1 1 19606
30% 1 1 16793
Entity #11: Chains: S - POLY A RNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - Exosome complex component SKI6 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29528
95% 3 3 17494
90% 3 3 17039
70% 3 3 15776
50% 3 3 13840
40% 3 3 12424
30% 30 35 369
Entity #3: Chains: C - Exosome complex component RRP43 protein, length: 394 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41164
95% 2 2 20737
90% 2 2 20107
70% 2 2 18430
50% 2 2 16067
40% 2 2 14340
30% 2 2 12321
Entity #4: Chains: D - Exosome complex component RRP46 protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29736
95% 2 2 23106
90% 2 2 22390
70% 2 2 20408
50% 2 2 17667
40% 2 2 15646
30% 2 2 13307
Entity #5: Chains: E - Exosome complex component RRP42 protein, length: 269 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44561
95% 2 2 22633
90% 2 2 21935
70% 2 2 20020
50% 2 2 17349
40% 2 2 15379
30% 2 2 13088
Entity #6: Chains: F - Exosome complex component MTR3 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45344
95% 2 2 22989
90% 2 2 22277
70% 2 2 20313
50% 2 2 17590
40% 2 2 15577
30% 2 2 13250
Entity #7: Chains: G - Exosome complex component RRP40 protein, length: 244 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 29775
95% 2 2 23130
90% 2 2 22414
70% 2 2 20429
50% 2 2 17686
40% 2 2 15662
30% 2 2 13321
Entity #8: Chains: H - Exosome complex component RRP4 protein, length: 363 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 26226
95% 2 2 21101
90% 2 2 20461
70% 2 2 18740
50% 2 2 16332
40% 2 2 14533
30% 2 2 12460
Entity #9: Chains: I - Exosome complex component CSL4 protein, length: 296 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 27908
95% 2 2 22074
90% 2 2 21396
70% 2 2 19533
50% 2 2 16968
40% 2 2 15056
30% 2 2 12842
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.