Sequence Similarity Clusters for the Entities in PDB 4OGA

Entity #1 | Chains: A
Insulin A chain protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 195 263 6
95 % 229 308 8 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 0.9
PDBFlex
90 % 228 306 11
70 % 232 313 14
50 % 232 313 22
40 % 232 313 30
30 % 232 313 35
Entity #2 | Chains: B
Insulin B chain protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 202 21
95 % 230 304 9 Flexibility: Medium
Max RMSD: 6.8, Avg RMSD: 3.4
PDBFlex
90 % 234 312 10
70 % 226 302 16
50 % 226 302 30
40 % 226 302 38
30 % 226 302 42
Entity #3 | Chains: C
monoclonal antibody fab 83-7 fragment - heavy chain protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 18690
95 % 2 5 17379 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 17101
70 % 24 31 2083
50 % 640 772 6
40 % 642 774 6
30 % 943 1169 6
Entity #4 | Chains: D
monoclonal antibody fab 83-7 fragment - light chain protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 18691
95 % 2 5 16322 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 9 8524
70 % 30 39 894
50 % 279 372 18
40 % 286 379 22
30 % 944 1169 6
Entity #5 | Chains: E
Insulin receptor domains L1-CR protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 12702
95 % 4 7 12571 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 7 12444
70 % 4 7 11832
50 % 4 7 10827
40 % 4 7 10213
30 % 4 7 9429
Entity #6 | Chains: F
Insulin receptor alpha-CT peptide protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures