POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA
Sequence Clustering and Redundancy Reduction Results
4NQA
Sequence Clusters for the Sequence Entities in PDB 4NQA
Entity #1: Chains: A,H - Retinoic acid receptor RXR-alpha protein, length: 365 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 27508
95% 1 1 22073
90% 1 1 21396
70% 1 1 19584
50% 1 1 17023
40% 1 1 15145
30% 1 1 12971
Entity #2: Chains: B,I - Liver X nuclear receptor beta protein, length: 391 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26982
95% 1 1 21764
90% 1 1 21095
70% 1 1 19315
50% 1 1 16795
40% 1 1 14983
30% 1 1 12853
Entity #3: Chains: C,D,J,K - Nuclear receptor coactivator 2 protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: E,L - 5'-D(*TP*AP*AP*GP*GP*TP*CP*AP*CP*TP*TP*CP*AP*GP*GP*TP*CP*A)-3' dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: F,M - 5'-D(*TP*AP*TP*GP*AP*CP*CP*TP*GP*AP*AP*GP*TP*GP*AP*CP*CP*T)-3' dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.