Sequence Similarity Clusters for the Entities in PDB 4NQA

Entity #1 | Chains: A,H
Retinoic acid receptor RXR-alpha protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26917
95 % 1 2 22691 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 5.5
PDBFlex
90 % 1 2 22025
70 % 1 2 20199
50 % 1 2 17508
40 % 1 2 15621
30 % 1 2 13399
Entity #2 | Chains: B,I
Liver X nuclear receptor beta protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35005
95 % 1 1 27996 Flexibility: Medium
Max RMSD: 8.5, Avg RMSD: 8.5
PDBFlex
90 % 1 1 27022
70 % 1 1 24445
50 % 1 1 21016
40 % 1 1 18644
30 % 1 1 15957
Entity #3 | Chains: C,D,J,K
Nuclear receptor coactivator 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
5'-D(*TP*AP*AP*GP*GP*TP*CP*AP*CP*TP*TP*CP*AP*GP*GP*TP*CP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: F,M
5'-D(*TP*AP*TP*GP*AP*CP*CP*TP*GP*AP*AP*GP*TP*GP*AP*CP*CP*T)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures