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Crystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA
Sequence Clustering and Redundancy Reduction Results
4NQA
Sequence Clusters for the Sequence Entities in PDB 4NQA
Entity #1: Chains: A,H - Retinoic acid receptor RXR-alpha protein, length: 365 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 25374
95% 1 1 20443
90% 1 1 19838
70% 1 1 18169
50% 1 1 15851
40% 1 1 14108
30% 1 1 12113
Entity #2: Chains: B,I - Liver X nuclear receptor beta protein, length: 391 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 24886
95% 1 1 20148
90% 1 1 19551
70% 1 1 17913
50% 1 1 15632
40% 1 1 13956
30% 1 1 12006
Entity #3: Chains: C,D,J,K - Nuclear receptor coactivator 2 protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: E,L - 5'-D(*TP*AP*AP*GP*GP*TP*CP*AP*CP*TP*TP*CP*AP*GP*GP*TP*CP*A)-3' dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: F,M - 5'-D(*TP*AP*TP*GP*AP*CP*CP*TP*GP*AP*AP*GP*TP*GP*AP*CP*CP*T)-3' dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.