Sequence Similarity Clusters for the Entities in PDB 4NQA

Entity #1 | Chains: A,H
Retinoic acid receptor RXR-alpha protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33376
95 % 1 1 26616 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 5.5
PDBFlex
90 % 1 1 25731
70 % 1 1 23406
50 % 1 1 20183
40 % 1 1 17878
30 % 1 1 15282
Entity #2 | Chains: B,I
Liver X nuclear receptor beta protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32747
95 % 1 1 26263 Flexibility: Medium
Max RMSD: 8.5, Avg RMSD: 8.5
PDBFlex
90 % 1 1 25391
70 % 1 1 23110
50 % 1 1 19939
40 % 1 1 17703
30 % 1 1 15155
Entity #3 | Chains: C,D,J,K
Nuclear receptor coactivator 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
5'-D(*TP*AP*AP*GP*GP*TP*CP*AP*CP*TP*TP*CP*AP*GP*GP*TP*CP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: F,M
5'-D(*TP*AP*TP*GP*AP*CP*CP*TP*GP*AP*AP*GP*TP*GP*AP*CP*CP*T)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.