Sequence Similarity Clusters for the Entities in PDB 4NQA

Entity #1 | Chains: A,H
Retinoic acid receptor RXR-alpha protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26561
95 % 1 2 22398 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 5.5
PDBFlex
90 % 1 2 21749
70 % 1 2 19957
50 % 1 2 17311
40 % 1 2 15453
30 % 1 2 13254
Entity #2 | Chains: B,I
Liver X nuclear receptor beta protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34586
95 % 1 1 27667 Flexibility: Medium
Max RMSD: 8.5, Avg RMSD: 8.5
PDBFlex
90 % 1 1 26710
70 % 1 1 24175
50 % 1 1 20796
40 % 1 1 18455
30 % 1 1 15793
Entity #3 | Chains: C,D,J,K
Nuclear receptor coactivator 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
5'-D(*TP*AP*AP*GP*GP*TP*CP*AP*CP*TP*TP*CP*AP*GP*GP*TP*CP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: F,M
5'-D(*TP*AP*TP*GP*AP*CP*CP*TP*GP*AP*AP*GP*TP*GP*AP*CP*CP*T)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures