Sequence Similarity Clusters for the Entities in PDB 4NDI

Entity #1 | Chains: A,B
Aprataxin protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43986
95 % 2 4 9816 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 2 4 9704
70 % 2 4 9257
50 % 2 4 8371
40 % 2 4 7680
30 % 2 4 6766
Entity #2 | Chains: D,G
5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3' hybrid, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,H
5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures