Sequence Similarity Clusters for the Entities in PDB 4NDH

Entity #1 | Chains: A,B
Aprataxin protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10229
95 % 1 4 9974 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 4 9855
70 % 1 4 9381
50 % 1 4 8512
40 % 1 4 7754
30 % 1 4 6717
Entity #2 | Chains: D,E,G,H
5'-D(P*GP*TP*TP*CP*TP*AP*GP*AP*AP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures