Sequence Similarity Clusters for the Entities in PDB 4NDG

Entity #1 | Chains: A,B
Aprataxin protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13432
95 % 4 4 9600 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 4 4 9490
70 % 4 4 9066
50 % 4 4 8204
40 % 4 4 7527
30 % 4 4 6634
Entity #2 | Chains: D,G
5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3' hybrid, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,H
5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures