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An Information Portal to 107620 Biological Macromolecular Structures

Human Aprataxin (Aptx) bound to RNA-DNA and Zn - adenosine vanadate transition state mimic complex
Sequence Clustering and Redundancy Reduction Results
4NDG
Sequence Clusters for the Sequence Entities in PDB 4NDG
Entity #1: Chains: A,B - Aprataxin protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10076
95% 4 4 7342
90% 4 4 7279
70% 4 4 6999
50% 4 4 6402
40% 4 4 5910
30% 4 4 5258
Entity #2: Chains: D,G - 5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3' hybrid, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: E,H - 5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3' dna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.