Sequence Similarity Clusters for the Entities in PDB 4NDF

Entity #1 | Chains: A,B
Aprataxin protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 4718
95 % 5 10 3325 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 10 3387
70 % 5 10 3349
50 % 5 10 3270
40 % 5 10 3165
30 % 5 10 2914
Entity #2 | Chains: D,G
5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3' hybrid, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,H
5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6CVQ 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
2 4NDH 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details
3 4NDI 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details
4 6CVR 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
5 4NDF 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details
6 6CVP 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
7 6CVS 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
8 6CVO 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
9 4NDG 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details
10 6CVT 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details