Sequence Similarity Clusters for the Entities in PDB 4NDF

Entity #1 | Chains: A,B
Aprataxin protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 4702
95 % 5 10 3317 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 10 3381
70 % 5 10 3340
50 % 5 10 3261
40 % 5 10 3159
30 % 5 10 2907
Entity #2 | Chains: D,G
5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3' hybrid, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,H
5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4NDH 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details
2 4NDI 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details
3 6CVR 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
4 4NDF 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details
5 6CVS 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
6 6CVO 1 A, B Aprataxin Aprataxin catalytic Domain 9606 3.1.11.7 | Details 3.1.12.2 | Details
7 4NDG 1 A, B Aprataxin 9606 3.1.11.7 | Details 3.1.12.2 | Details