Sequence Similarity Clusters for the Entities in PDB 4N7H

Entity #1 | Chains: A
E3 ubiquitin-protein ligase NEDD4 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 76278
95 % 2 2 25822 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.3
PDBFlex
90 % 2 2 24951
70 % 2 2 22656
50 % 3 57 998
40 % 3 77 726
30 % 3 77 720
Entity #2 | Chains: B
Arrestin domain-containing protein 3 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4N7F 1 A, B E3 ubiquitin-protein ligase NEDD4 WW3 domain (UNP residues 841-874) 9606 2.3.2.26 | Details
2 5VTJ 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 WW domain sequence 1 (UNP residues 6-39) 9606 5.2.1.8 | Details
3 4N7H 1 A E3 ubiquitin-protein ligase NEDD4 3rd WW domain (UNP residues 840-872) 9606 2.3.2.26 | Details
4 5VTK 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 WW domain sequence 1 (UNP residues 6-39) 9606 5.2.1.8 | Details
5 5VTI 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 WW domain sequence 3 (UNP residues 6-39) 9606 5.2.1.8 | Details
6 4GWT 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 WW domain from Pin1, (6-39) 9606 5.2.1.8 | Details
7 4GWV 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 WW domain from Pin1, (6-39) 9606 5.2.1.8 | Details
8 2NC3 1 A Pin1 WW Domain 9606
9 2NC4 1 A Pin1 WW Domain 9606
10 2NC5 1 A Pin1 WW Domain 9606
11 2NC6 1 A Pin1 WW Domain 9606
12 2N8S 1 A E3 ubiquitin-protein ligase NEDD4 WW1 Domain 10116 2.3.2.26 | Details
13 2N8T 1 A E3 ubiquitin-protein ligase NEDD4 WW2 Domain 10116 2.3.2.26 | Details
14 2N8U 1 A E3 ubiquitin-protein ligase NEDD4 WW2 Domain 10116 2.3.2.26 | Details
15 2N1O 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 UNP residues 7-39 9606 5.2.1.8 | Details
16 5AHT 1 A E3 UBIQUITIN-PROTEIN LIGASE NEDD4 WW3, UNP RESIDUES 838-877 9606 2.3.2.26 | Details
17 2MPT 1 A E3 ubiquitin-protein ligase NEDD4-like WW3 domain, UNP RESIDUES 496-539 9606 2.3.2.26 | Details
18 2MDW 1 A, B Designed protein 32630
19 2M9I 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 MODIFIED WW DOMAIN (UNP RESIDUES 6-39) 9606 5.2.1.8 | Details
20 2M9J 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 MODIFIED WW DOMAIN (UNP RESIDUES 6-39) 9606 5.2.1.8 | Details
21 2M9E 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 modified WW domain (UNP residues 6-39, see remark 999) 9606 5.2.1.8 | Details
22 2M9F 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 modified WW domain (UNP residues 6-39, see remark 999) 9606 5.2.1.8 | Details
23 2M3O 1 W E3 ubiquitin-protein ligase NEDD4 third WW domain 9606 2.3.2.26 | Details
24 2LTV 1 A Yorkie homolog WW2 domain (UNP residues 230-265) 9606
25 2LTW 1 A Yorkie homolog WW1 domain (UNP residues 170-205) 9606
26 2LTX 1 A E3 ubiquitin-protein ligase SMURF1 WW2 domain (UNP residues 306-340) 9606 2.3.2.26 | Details
27 2LTY 1 A E3 ubiquitin-protein ligase NEDD4-like WW2 domain (UNP residues 385-417) 9606 2.3.2.26 | Details
28 2LTZ 1 A E3 ubiquitin-protein ligase SMURF2 WW3 domain (UNP residues 297-333) 9606 2.3.2.26 | Details
29 2LAW 1 A Yorkie homolog second WW domain, residues 230-263 9606
30 2LAX 1 A Yorkie homolog first WW domain, residues 170-205 9606
31 2LAY 1 A Yorkie homolog residues 170-205 9606
32 2LAZ 1 A E3 ubiquitin-protein ligase SMURF1 residues 235-267 9606 2.3.2.26 | Details
33 2LB0 1 A E3 ubiquitin-protein ligase SMURF1 residues 235-267 9606 2.3.2.26 | Details
34 2LB1 1 A E3 ubiquitin-protein ligase SMURF1 residues 305-339 9606 2.3.2.26 | Details
35 2LB2 1 A E3 ubiquitin-protein ligase NEDD4-like residues 386-420 9606 2.3.2.26 | Details
36 2LB3 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 residues 6-41 9606 5.2.1.8 | Details
37 2LAJ 1 A E3 ubiquitin-protein ligase NEDD4-like WW 3 domain residues 496-535 9606 2.3.2.26 | Details
38 2KYK 1 A E3 ubiquitin-protein ligase Itchy homolog WW 2 domain 9606 2.3.2.26 | Details
39 2KCF 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 9606 5.2.1.8 | Details
40 2KBU 1 A Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 residues RSSG replaced by the beta-turn mimic CFD UNP residues 6-39 9606 5.2.1.8 | Details
41 2YSF 1 A E3 ubiquitin-protein ligase Itchy homolog WW domain, UNP residues 480-512 9606 2.3.2.26 | Details
42 2YSG 1 A Syntaxin-binding protein 4 WW domain, UNP residues 498-530 9606
43 2JOC 1 A Itchy E3 ubiquitin protein ligase WW 3 domain, sequence database residues 399-432 10090 2.3.2.26 | Details
44 2JO9 1 A Itchy E3 ubiquitin protein ligase WW 3 DOMAIN, SEQUENCE DATABASE RESIDUES 399-432 10090 2.3.2.26 | Details
45 2JMF 1 A E3 ubiquitin-protein ligase suppressor of deltex WW4 domain, residues 515-557 7227 2.3.2.26 | Details
46 2DJY 1 A Smad ubiquitination regulatory factor 2 WW3 domain 9606 2.3.2.26 | Details
47 1YIU 1 A Itchy E3 ubiquitin protein ligase WW3 10090 2.3.2.26 | Details
48 1WR7 1 A Nedd4-2 third WW domain 10090 2.3.2.26 | Details
49 1WR3 1 A ubiquitin-protein ligase Nedd4-2 first WW domain 10090 2.3.2.26 | Details
50 1WR4 1 A ubiquitin-protein ligase Nedd4-2 second WW domain 10090 2.3.2.26 | Details
51 1K9Q 1 A 65 kDa Yes-associated protein Wild type WW domain 9606
52 1K9R 1 A 65 kDa Yes-associated protein Wild type WW domain 9606
53 1K5R 1 A 65 KDA YES-ASSOCIATED PROTEIN 40-peptide construct with synthetic Amino-ethyl-sulfanyl-acetic acid link at position 24 WW domain, residues 5-44 9606
54 1I8G 2 B PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 WW DOMAIN (RESIDUES 6-44) 9606 5.2.1.8 | Details
55 1I8H 2 B PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 WW DOMAIN (RESIDUES 6-44) 9606 5.2.1.8 | Details
56 1I6C 1 A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 WW DOMAIN (RESIDUES 6-44) 9606 5.2.1.8 | Details
57 1E0M 1 A WWPROTOTYPE DOMAIN 32630