Sequence Similarity Clusters for the Entities in PDB 4MGT

Entity #1 | Chains: A
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60043
95 % 14 18 3227 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.3
PDBFlex
90 % 14 18 3271
70 % 14 18 3240
50 % 14 18 3167
40 % 14 18 3085
30 % 14 18 2892
Entity #2 | Chains: B
DNA1 dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA2 dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.