Sequence Similarity Clusters for the Entities in PDB 4MDX

Entity #1 | Chains: A,B
mRNA interferase EndoA protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13714
95 % 1 3 10687 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 1 4 7881
70 % 1 4 7642
50 % 2 10 2125
40 % 2 10 2117
30 % 2 14 1479
Entity #2 | Chains: C
RNA, mRNA rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.