Sequence Similarity Clusters for the Entities in PDB 4MDX

Entity #1 | Chains: A,B
mRNA interferase EndoA protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11165
95 % 1 3 10784 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 1 4 7942
70 % 1 4 7670
50 % 2 10 2173
40 % 2 10 2167
30 % 2 14 1526
Entity #2 | Chains: C
RNA, mRNA rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures