Sequence Similarity Clusters for the Entities in PDB 4MDX

Entity #1 | Chains: A,B
mRNA interferase EndoA protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13502
95 % 1 3 10516 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 1 4 7764
70 % 1 4 7492
50 % 2 10 2107
40 % 2 10 2094
30 % 2 14 1465
Entity #2 | Chains: C
RNA, mRNA rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.