Sequence Similarity Clusters for the Entities in PDB 4MDF

Entity #1 | Chains: A,B
Metallophosphoesterase protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 2885
95 % 2 10 3194 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 10 3249
70 % 2 10 3202
50 % 2 10 3147
40 % 2 10 3057
30 % 2 10 2822
Entity #2 | Chains: C,D
DNA (5'-D(*CP*CP*TP*GP*T)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures