Sequence Similarity Clusters for the Entities in PDB 4MDF

Entity #1 | Chains: A,B
Metallophosphoesterase protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 2947
95 % 2 10 3261 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 10 3320
70 % 2 10 3264
50 % 2 10 3198
40 % 2 10 3110
30 % 2 10 2877
Entity #2 | Chains: C,D
DNA (5'-D(*CP*CP*TP*GP*T)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures