Sequence Similarity Clusters for the Entities in PDB 4MDF

Entity #1 | Chains: A,B
Metallophosphoesterase protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 2880
95 % 2 10 3193 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 10 3248
70 % 2 10 3201
50 % 2 10 3146
40 % 2 10 3051
30 % 2 10 2819
Entity #2 | Chains: C,D
DNA (5'-D(*CP*CP*TP*GP*T)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures