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Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA
Sequence Clustering and Redundancy Reduction Results
4M9E
Cluster # 18246 Members. Sequence cutoff: 90% Cluster size: 3 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2WBS 1 A KRUEPPEL-LIKE FACTOR 4 DNA-BINDING DOMAIN, RESIDUES 395-483 10090  
2 4M9E 1 A Krueppel-like factor 4 UNP residues 396-483 10090  
3 2WBU 1 A KRUEPPEL-LIKE FACTOR 4 RESIDUES 396-483 10090  
 
Sequence Clusters for the Sequence Entities in PDB 4M9E
Entity #1: Chains: A - Krueppel-like factor 4 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 22486
95% 2 3 18802
90% 2 3 18246
70% 2 3 16797
50% 2 3 14738
40% 10 160 208
30% 11 170 211
Entity #2: Chains: B - DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3') dna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3') dna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.