Sequence Similarity Clusters for the Entities in PDB 4M9E

Entity #1 | Chains: A
Krueppel-like factor 4 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16277
95 % 2 9 8161 Flexibility: Medium
Max RMSD: 9.2, Avg RMSD: 3.1
PDBFlex
90 % 2 9 8110
70 % 2 10 7233
50 % 2 10 6665
40 % 15 181 267
30 % 17 208 233
Entity #2 | Chains: B
DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WBS 1 A KRUEPPEL-LIKE FACTOR 4 DNA-BINDING DOMAIN, RESIDUES 395-483 10090
2 4M9E 1 A Krueppel-like factor 4 UNP residues 396-483 10090
3 5KE6 1 A Krueppel-like factor 4 unp residues 396-483 10090
4 5KE7 1 A Krueppel-like factor 4 unp residues 396-483 10090
5 2WBU 1 A KRUEPPEL-LIKE FACTOR 4 RESIDUES 396-483 10090