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Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA
Sequence Clustering and Redundancy Reduction Results
4M9E
Sequence Clusters for the Sequence Entities in PDB 4M9E
Entity #1: Chains: A - Krueppel-like factor 4 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 23989
95% 2 3 19987
90% 2 3 19374
70% 2 3 17791
50% 2 3 15563
40% 11 166 224
30% 12 178 224
Entity #2: Chains: B - DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3') dna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3') dna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.