Sequence Similarity Clusters for the Entities in PDB 4M94

Entity #1 | Chains: A
Gag-Pol polyprotein protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 26 1510
95 % 13 27 1936 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 13 27 1984
70 % 13 27 2008
50 % 13 27 2019
40 % 13 27 2016
30 % 13 27 1937
Entity #2 | Chains: B
5' d(ATCCGttA) 3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G
5' d(TAACGGAT) 3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures