Sequence Similarity Clusters for the Entities in PDB 4M7D

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13240
95 % 1 3 12575
90 % 1 3 12371
70 % 1 3 11625
50 % 1 3 10417
40 % 1 3 9441
30 % 1 3 8231
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 6381
95 % 1 7 5754
90 % 1 7 5750
70 % 1 7 5623
50 % 1 8 4656
40 % 1 8 4420
30 % 1 8 4036
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 6396
95 % 3 11 3046
90 % 3 11 3088
70 % 3 11 3061
50 % 3 11 2988
40 % 3 11 2921
30 % 3 11 2735
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 3879
95 % 2 9 4628
90 % 2 9 4641
70 % 2 9 4541
50 % 2 9 4390
40 % 2 9 4181
30 % 2 9 3839
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 3870
95 % 2 9 4619
90 % 2 9 4631
70 % 2 9 4532
50 % 2 9 4379
40 % 2 9 4172
30 % 2 9 3830
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 3838
95 % 2 9 4593
90 % 2 9 4606
70 % 2 9 4510
50 % 2 9 4361
40 % 2 9 4157
30 % 2 9 3811
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 9280
95 % 1 4 9345
90 % 1 4 9235
70 % 1 4 8793
50 % 1 4 7972
40 % 1 4 7309
30 % 1 4 6449
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.