Sequence Similarity Clusters for the Entities in PDB 4M7D

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13806
95 % 1 3 13113
90 % 1 3 12904
70 % 1 3 12161
50 % 1 3 10851
40 % 1 3 9846
30 % 1 3 8573
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 6697
95 % 1 8 5115
90 % 1 8 5127
70 % 1 8 5072
50 % 1 10 4222
40 % 1 10 4028
30 % 1 10 3715
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 6712
95 % 3 12 2932
90 % 3 12 2979
70 % 3 12 2952
50 % 3 12 2912
40 % 3 12 2872
30 % 3 12 2685
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 3652
95 % 2 10 4437
90 % 2 10 4458
70 % 2 10 4388
50 % 2 10 4227
40 % 2 10 4033
30 % 2 10 3720
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 3648
95 % 2 10 4432
90 % 2 10 4453
70 % 2 10 4385
50 % 2 10 4225
40 % 2 10 4030
30 % 2 10 3717
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 3638
95 % 2 10 4423
90 % 2 10 4445
70 % 2 10 4377
50 % 2 10 4216
40 % 2 10 4023
30 % 2 10 3708
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 9681
95 % 1 4 9761
90 % 1 4 9653
70 % 1 4 9193
50 % 1 4 8315
40 % 1 4 7614
30 % 1 4 6717
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.