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Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU
Sequence Clustering and Redundancy Reduction Results
4M7D
Sequence Clusters for the Sequence Entities in PDB 4M7D
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 10185
95% 1 3 9931
90% 1 3 9790
70% 1 3 9274
50% 1 3 8372
40% 1 3 7631
30% 1 3 6747
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 4804
95% 1 5 5381
90% 1 5 5387
70% 1 5 5294
50% 1 5 4988
40% 1 5 4668
30% 1 5 4226
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 4820
95% 3 9 2564
90% 3 9 2602
70% 3 9 2610
50% 3 9 2632
40% 3 9 2594
30% 3 9 2421
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 3854
95% 2 7 4422
90% 2 7 4441
70% 2 7 4392
50% 2 7 4218
40% 2 7 3984
30% 2 7 3624
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 3848
95% 2 7 4413
90% 2 7 4432
70% 2 7 4386
50% 2 7 4209
40% 2 7 3976
30% 2 7 3617
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 3816
95% 2 7 4383
90% 2 7 4404
70% 2 7 4357
50% 2 7 4182
40% 2 7 3953
30% 2 7 3595
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 7081
95% 1 4 7333
90% 1 4 7266
70% 1 4 6967
50% 1 4 6382
40% 1 4 5879
30% 1 4 5252
Entity #8: Chains: O,P - U6 snRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.