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An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU
Sequence Clustering and Redundancy Reduction Results
4M7D
Sequence Clusters for the Sequence Entities in PDB 4M7D
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 11108
95% 1 3 10691
90% 1 3 10524
70% 1 3 9937
50% 1 3 8947
40% 1 3 8160
30% 1 3 7168
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 5287
95% 1 5 5880
90% 1 5 5863
70% 1 5 5733
50% 1 5 5343
40% 1 5 4998
30% 1 5 4504
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 5302
95% 3 9 2864
90% 3 9 2907
70% 3 9 2911
50% 3 9 2866
40% 3 9 2789
30% 3 9 2605
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4294
95% 2 7 4884
90% 2 7 4895
70% 2 7 4812
50% 2 7 4551
40% 2 7 4284
30% 2 7 3885
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4285
95% 2 7 4874
90% 2 7 4886
70% 2 7 4805
50% 2 7 4542
40% 2 7 4276
30% 2 7 3878
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4251
95% 2 7 4843
90% 2 7 4857
70% 2 7 4775
50% 2 7 4514
40% 2 7 4252
30% 2 7 3853
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 7761
95% 1 4 7924
90% 1 4 7843
70% 1 4 7487
50% 1 4 6834
40% 1 4 6302
30% 1 4 5602
Entity #8: Chains: O,P - U6 snRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.