Sequence Similarity Clusters for the Entities in PDB 4M7D

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14026
95 % 1 3 13307 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 3 13084
70 % 1 3 12304
50 % 1 3 10972
40 % 1 3 9949
30 % 1 3 8671
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 6796
95 % 1 8 5213 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 8 5233
70 % 1 8 5152
50 % 1 10 4276
40 % 1 10 4084
30 % 1 10 3773
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 6812
95 % 3 12 2983 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 3 12 3032
70 % 3 12 2996
50 % 3 12 2951
40 % 3 12 2911
30 % 3 12 2722
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 3733
95 % 2 10 4522 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 2 10 4542
70 % 2 10 4457
50 % 2 10 4281
40 % 2 10 4088
30 % 2 10 3777
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 3729
95 % 2 10 4517 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 10 4537
70 % 2 10 4453
50 % 2 10 4279
40 % 2 10 4086
30 % 2 10 3775
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 3717
95 % 2 10 4506 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 2 10 4527
70 % 2 10 4445
50 % 2 10 4269
40 % 2 10 4077
30 % 2 10 3767
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9824
95 % 1 4 9899 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 4 9780
70 % 1 4 9297
50 % 1 4 8407
40 % 1 4 7700
30 % 1 4 6792
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.