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Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU
Sequence Clustering and Redundancy Reduction Results
4M7D
Sequence Clusters for the Sequence Entities in PDB 4M7D
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 10854
95% 1 3 10478
90% 1 3 10318
70% 1 3 9766
50% 1 3 8805
40% 1 3 8025
30% 1 3 7059
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 5158
95% 1 5 5755
90% 1 5 5748
70% 1 5 5619
50% 1 5 5242
40% 1 5 4905
30% 1 5 4416
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 5174
95% 3 9 2804
90% 3 9 2841
70% 3 9 2841
50% 3 9 2809
40% 3 9 2745
30% 3 9 2558
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4180
95% 2 7 4758
90% 2 7 4766
70% 2 7 4698
50% 2 7 4463
40% 2 7 4203
30% 2 7 3813
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4171
95% 2 7 4746
90% 2 7 4755
70% 2 7 4691
50% 2 7 4454
40% 2 7 4195
30% 2 7 3806
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4137
95% 2 7 4717
90% 2 7 4728
70% 2 7 4663
50% 2 7 4427
40% 2 7 4173
30% 2 7 3783
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 7561
95% 1 4 7763
90% 1 4 7690
70% 1 4 7359
50% 1 4 6723
40% 1 4 6195
30% 1 4 5506
Entity #8: Chains: O,P - U6 snRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.