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Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU
Sequence Clustering and Redundancy Reduction Results
4M7D
Sequence Clusters for the Sequence Entities in PDB 4M7D
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 10295
95% 1 3 10027
90% 1 3 9883
70% 1 3 9362
50% 1 3 8448
40% 1 3 7697
30% 1 3 6797
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 4872
95% 1 5 5453
90% 1 5 5460
70% 1 5 5361
50% 1 5 5040
40% 1 5 4714
30% 1 5 4266
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 4889
95% 3 9 2657
90% 3 9 2692
70% 3 9 2685
50% 3 9 2673
40% 3 9 2625
30% 3 9 2446
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 3921
95% 2 7 4487
90% 2 7 4503
70% 2 7 4451
50% 2 7 4271
40% 2 7 4026
30% 2 7 3662
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 3915
95% 2 7 4478
90% 2 7 4494
70% 2 7 4445
50% 2 7 4262
40% 2 7 4018
30% 2 7 3655
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 3885
95% 2 7 4450
90% 2 7 4468
70% 2 7 4418
50% 2 7 4236
40% 2 7 3995
30% 2 7 3633
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 7162
95% 1 4 7416
90% 1 4 7348
70% 1 4 7041
50% 1 4 6451
40% 1 4 5940
30% 1 4 5298
Entity #8: Chains: O,P - U6 snRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.