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An Information Portal to 107754 Biological Macromolecular Structures

Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU
Sequence Clustering and Redundancy Reduction Results
4M7D
Sequence Clusters for the Sequence Entities in PDB 4M7D
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 10769
95% 1 3 10400
90% 1 3 10242
70% 1 3 9693
50% 1 3 8739
40% 1 3 7964
30% 1 3 7010
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 5123
95% 1 5 5717
90% 1 5 5717
70% 1 5 5586
50% 1 5 5209
40% 1 5 4871
30% 1 5 4394
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 5141
95% 3 9 2789
90% 3 9 2823
70% 3 9 2822
50% 3 9 2793
40% 3 9 2725
30% 3 9 2539
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4146
95% 2 7 4727
90% 2 7 4740
70% 2 7 4669
50% 2 7 4434
40% 2 7 4172
30% 2 7 3787
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4137
95% 2 7 4715
90% 2 7 4729
70% 2 7 4662
50% 2 7 4425
40% 2 7 4164
30% 2 7 3780
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4104
95% 2 7 4685
90% 2 7 4701
70% 2 7 4633
50% 2 7 4397
40% 2 7 4141
30% 2 7 3757
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 7503
95% 1 4 7696
90% 1 4 7622
70% 1 4 7295
50% 1 4 6666
40% 1 4 6141
30% 1 4 5463
Entity #8: Chains: O,P - U6 snRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.