Sequence Similarity Clusters for the Entities in PDB 4M7A

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12108
95 % 2 3 11595
90 % 2 3 11402
70 % 2 3 10727
50 % 2 3 9643
40 % 2 3 8782
30 % 2 3 7690
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5783
95 % 2 7 5272
90 % 2 7 5275
70 % 2 7 5171
50 % 2 8 4284
40 % 2 8 4080
30 % 2 8 3755
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5797
95 % 4 11 2744
90 % 4 11 2786
70 % 4 11 2792
50 % 4 11 2740
40 % 4 11 2690
30 % 4 11 2516
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3527
95 % 3 9 4233
90 % 3 9 4252
70 % 3 9 4187
50 % 3 9 4042
40 % 3 9 3855
30 % 3 9 3565
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3519
95 % 3 9 4223
90 % 3 9 4241
70 % 3 9 4177
50 % 3 9 4030
40 % 3 9 3845
30 % 3 9 3555
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3490
95 % 3 9 4199
90 % 3 9 4217
70 % 3 9 4156
50 % 3 9 4016
40 % 3 9 3832
30 % 3 9 3538
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 8448
95 % 2 4 8571
90 % 2 4 8487
70 % 2 4 8085
50 % 2 4 7367
40 % 2 4 6788
30 % 2 4 6017
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.