Sequence Similarity Clusters for the Entities in PDB 4M7A

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12967
95 % 2 3 12322
90 % 2 3 12125
70 % 2 3 11388
50 % 2 3 10207
40 % 2 3 9251
30 % 2 3 8068
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 6216
95 % 2 7 5608
90 % 2 7 5611
70 % 2 7 5495
50 % 2 8 4549
40 % 2 8 4329
30 % 2 8 3966
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 6230
95 % 4 11 2982
90 % 4 11 3025
70 % 4 11 3001
50 % 4 11 2931
40 % 4 11 2857
30 % 4 11 2682
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3799
95 % 3 9 4523
90 % 3 9 4537
70 % 3 9 4447
50 % 3 9 4293
40 % 3 9 4094
30 % 3 9 3772
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3790
95 % 3 9 4514
90 % 3 9 4527
70 % 3 9 4438
50 % 3 9 4282
40 % 3 9 4085
30 % 3 9 3763
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3758
95 % 3 9 4487
90 % 3 9 4500
70 % 3 9 4414
50 % 3 9 4264
40 % 3 9 4070
30 % 3 9 3744
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 9073
95 % 2 4 9136
90 % 2 4 9036
70 % 2 4 8606
50 % 2 4 7807
40 % 2 4 7161
30 % 2 4 6322
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.