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Crystal structure of Lsm2-8 complex bound to the 3' end sequence of U6 snRNA
Sequence Clustering and Redundancy Reduction Results
4M7A
Sequence Clusters for the Sequence Entities in PDB 4M7A
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 11008
95% 2 3 10599
90% 2 3 10439
70% 2 3 9869
50% 2 3 8887
40% 2 3 8099
30% 2 3 7116
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 5235
95% 2 5 5832
90% 2 5 5818
70% 2 5 5690
50% 2 5 5305
40% 2 5 4966
30% 2 5 4473
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 5251
95% 4 9 2844
90% 4 9 2885
70% 4 9 2893
50% 4 9 2850
40% 4 9 2779
30% 4 9 2588
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4254
95% 3 7 4846
90% 3 7 4856
70% 3 7 4777
50% 3 7 4523
40% 3 7 4258
30% 3 7 3861
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4246
95% 3 7 4835
90% 3 7 4846
70% 3 7 4770
50% 3 7 4514
40% 3 7 4250
30% 3 7 3854
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4213
95% 3 7 4805
90% 3 7 4818
70% 3 7 4740
50% 3 7 4486
40% 3 7 4226
30% 3 7 3829
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 7689
95% 2 4 7857
90% 2 4 7779
70% 2 4 7436
50% 2 4 6788
40% 2 4 6262
30% 2 4 5561
Entity #8: Chains: O,P - U6 snRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.