Sequence Similarity Clusters for the Entities in PDB 4M7A

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 11978
95 % 2 3 11475
90 % 2 3 11293
70 % 2 3 10632
50 % 2 3 9563
40 % 2 3 8709
30 % 2 3 7637
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5728
95 % 2 7 5231
90 % 2 7 5238
70 % 2 7 5136
50 % 2 8 4250
40 % 2 8 4047
30 % 2 8 3723
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5742
95 % 4 11 2718
90 % 4 11 2759
70 % 4 11 2767
50 % 4 11 2718
40 % 4 11 2669
30 % 4 11 2498
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3490
95 % 3 9 4199
90 % 3 9 4219
70 % 3 9 4159
50 % 3 9 4012
40 % 3 9 3824
30 % 3 9 3532
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3482
95 % 3 9 4189
90 % 3 9 4208
70 % 3 9 4149
50 % 3 9 4000
40 % 3 9 3814
30 % 3 9 3522
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3453
95 % 3 9 4165
90 % 3 9 4184
70 % 3 9 4128
50 % 3 9 3986
40 % 3 9 3801
30 % 3 9 3505
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 8366
95 % 2 4 8484
90 % 2 4 8402
70 % 2 4 8009
50 % 2 4 7304
40 % 2 4 6729
30 % 2 4 5968
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.