Sequence Similarity Clusters for the Entities in PDB 4M7A

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12229
95 % 2 3 11711
90 % 2 3 11521
70 % 2 3 10841
50 % 2 3 9741
40 % 2 3 8862
30 % 2 3 7759
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5825
95 % 2 7 5316
90 % 2 7 5320
70 % 2 7 5213
50 % 2 8 4326
40 % 2 8 4115
30 % 2 8 3786
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5839
95 % 4 11 2777
90 % 4 11 2820
70 % 4 11 2821
50 % 4 11 2769
40 % 4 11 2713
30 % 4 11 2537
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3571
95 % 3 9 4273
90 % 3 9 4290
70 % 3 9 4224
50 % 3 9 4079
40 % 3 9 3887
30 % 3 9 3592
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3563
95 % 3 9 4264
90 % 3 9 4280
70 % 3 9 4215
50 % 3 9 4068
40 % 3 9 3878
30 % 3 9 3583
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3532
95 % 3 9 4239
90 % 3 9 4255
70 % 3 9 4193
50 % 3 9 4053
40 % 3 9 3864
30 % 3 9 3565
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 8522
95 % 2 4 8646
90 % 2 4 8560
70 % 2 4 8158
50 % 2 4 7436
40 % 2 4 6845
30 % 2 4 6067
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.