Sequence Similarity Clusters for the Entities in PDB 4M7A

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12302
95 % 2 3 11778
90 % 2 3 11588
70 % 2 3 10902
50 % 2 3 9789
40 % 2 3 8905
30 % 2 3 7799
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5848
95 % 2 7 5339
90 % 2 7 5343
70 % 2 7 5237
50 % 2 8 4344
40 % 2 8 4133
30 % 2 8 3802
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 5862
95 % 4 11 2793
90 % 4 11 2836
70 % 4 11 2832
50 % 4 11 2784
40 % 4 11 2725
30 % 4 11 2546
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3582
95 % 3 9 4295
90 % 3 9 4311
70 % 3 9 4239
50 % 3 9 4099
40 % 3 9 3904
30 % 3 9 3607
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3574
95 % 3 9 4286
90 % 3 9 4301
70 % 3 9 4230
50 % 3 9 4088
40 % 3 9 3895
30 % 3 9 3598
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3543
95 % 3 9 4261
90 % 3 9 4276
70 % 3 9 4208
50 % 3 9 4073
40 % 3 9 3881
30 % 3 9 3580
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 8565
95 % 2 4 8688
90 % 2 4 8604
70 % 2 4 8192
50 % 2 4 7466
40 % 2 4 6869
30 % 2 4 6094
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.