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Crystal structure of Lsm2-8 complex bound to the 3' end sequence of U6 snRNA
Sequence Clustering and Redundancy Reduction Results
4M7A
Sequence Clusters for the Sequence Entities in PDB 4M7A
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 10827
95% 2 3 10451
90% 2 3 10292
70% 2 3 9741
50% 2 3 8781
40% 2 3 8006
30% 2 3 7043
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 5150
95% 2 5 5746
90% 2 5 5740
70% 2 5 5611
50% 2 5 5235
40% 2 5 4898
30% 2 5 4409
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 5166
95% 4 9 2801
90% 4 9 2839
70% 4 9 2838
50% 4 9 2805
40% 4 9 2739
30% 4 9 2551
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4172
95% 3 7 4748
90% 3 7 4758
70% 3 7 4689
50% 3 7 4454
40% 3 7 4195
30% 3 7 3802
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4163
95% 3 7 4736
90% 3 7 4747
70% 3 7 4682
50% 3 7 4445
40% 3 7 4187
30% 3 7 3795
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4129
95% 3 7 4707
90% 3 7 4720
70% 3 7 4654
50% 3 7 4418
40% 3 7 4165
30% 3 7 3772
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 7545
95% 2 4 7744
90% 2 4 7671
70% 2 4 7342
50% 2 4 6709
40% 2 4 6182
30% 2 4 5494
Entity #8: Chains: O,P - U6 snRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.