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Crystal structure of Lsm2-8 complex, space group P21
Sequence Clustering and Redundancy Reduction Results
4M78
Sequence Clusters for the Sequence Entities in PDB 4M78
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10442
95% 3 3 10159
90% 3 3 10010
70% 3 3 9472
50% 3 3 8548
40% 3 3 7787
30% 3 3 6873
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 4952
95% 3 5 5531
90% 3 5 5536
70% 3 5 5439
50% 3 5 5097
40% 3 5 4769
30% 3 5 4312
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 4969
95% 5 9 2691
90% 5 9 2724
70% 5 9 2725
50% 5 9 2714
40% 5 9 2659
30% 5 9 2474
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 3992
95% 4 7 4557
90% 4 7 4574
70% 4 7 4520
50% 4 7 4324
40% 4 7 4075
30% 4 7 3707
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 3985
95% 4 7 4547
90% 4 7 4565
70% 4 7 4514
50% 4 7 4315
40% 4 7 4067
30% 4 7 3700
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 3953
95% 4 7 4519
90% 4 7 4539
70% 4 7 4486
50% 4 7 4289
40% 4 7 4044
30% 4 7 3676
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 7266
95% 3 4 7519
90% 3 4 7448
70% 3 4 7132
50% 3 4 6527
40% 3 4 6012
30% 3 4 5362
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.