Sequence Similarity Clusters for the Entities in PDB 4M78

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12526
95 % 3 3 11964
90 % 3 3 11771
70 % 3 3 11078
50 % 3 3 9940
40 % 3 3 9039
30 % 3 3 7904
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5979
95 % 3 7 5437
90 % 3 7 5439
70 % 3 7 5332
50 % 3 8 4419
40 % 3 8 4205
30 % 3 8 3859
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5994
95 % 5 11 2845
90 % 5 11 2887
70 % 5 11 2882
50 % 5 11 2833
40 % 5 11 2770
30 % 5 11 2591
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3657
95 % 4 9 4370
90 % 4 9 4388
70 % 4 9 4311
50 % 4 9 4170
40 % 4 9 3974
30 % 4 9 3664
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3649
95 % 4 9 4361
90 % 4 9 4378
70 % 4 9 4302
50 % 4 9 4159
40 % 4 9 3965
30 % 4 9 3655
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3616
95 % 4 9 4335
90 % 4 9 4352
70 % 4 9 4279
50 % 4 9 4143
40 % 4 9 3951
30 % 4 9 3637
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 8736
95 % 3 4 8843
90 % 3 4 8749
70 % 3 4 8334
50 % 3 4 7589
40 % 3 4 6980
30 % 3 4 6181

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.