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Crystal structure of Lsm2-8 complex, space group P21
Sequence Clustering and Redundancy Reduction Results
4M78
Sequence Clusters for the Sequence Entities in PDB 4M78
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 11236
95% 3 3 10815
90% 3 3 10646
70% 3 3 10048
50% 3 3 9048
40% 3 3 8250
30% 3 3 7246
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 5352
95% 3 5 5949
90% 3 5 5932
70% 3 5 5798
50% 3 5 5404
40% 3 5 5053
30% 3 5 4559
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 5367
95% 5 9 2947
90% 5 9 2992
70% 5 9 2978
50% 5 9 2895
40% 5 9 2817
30% 5 9 2631
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4354
95% 4 7 4945
90% 4 7 4958
70% 4 7 4872
50% 4 7 4606
40% 4 7 4332
30% 4 7 3932
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4344
95% 4 7 4934
90% 4 7 4948
70% 4 7 4864
50% 4 7 4596
40% 4 7 4323
30% 4 7 3924
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4310
95% 4 7 4903
90% 4 7 4919
70% 4 7 4834
50% 4 7 4568
40% 4 7 4299
30% 4 7 3899
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 7847
95% 3 4 8011
90% 3 4 7929
70% 3 4 7563
50% 3 4 6908
40% 3 4 6367
30% 3 4 5663
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.