Sequence Similarity Clusters for the Entities in PDB 4M78

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13452
95 % 3 3 12775 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 3 12566
70 % 3 3 11799
50 % 3 3 10556
40 % 3 3 9572
30 % 3 3 8324
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6489
95 % 3 8 4957 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 3 8 4973
70 % 3 8 4913
50 % 3 9 4429
40 % 3 9 4219
30 % 3 9 3871
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6504
95 % 5 12 2857 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.9
PDBFlex
90 % 5 12 2903
70 % 5 12 2875
50 % 5 12 2831
40 % 5 12 2801
30 % 5 12 2614
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 3529
95 % 4 10 4310 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 10 4330
70 % 4 10 4251
50 % 4 10 4114
40 % 4 10 3934
30 % 4 10 3627
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 3525
95 % 4 10 4305 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 10 4325
70 % 4 10 4248
50 % 4 10 4112
40 % 4 10 3931
30 % 4 10 3624
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 10 3515
95 % 4 10 4296
90 % 4 10 4317
70 % 4 10 4240
50 % 4 10 4104
40 % 4 10 3925
30 % 4 10 3616
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 9434
95 % 3 4 9498 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 4 9387
70 % 3 4 8926
50 % 3 4 8081
40 % 3 4 7406
30 % 3 4 6529

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.