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Crystal structure of Lsm2-8 complex, space group P21
Sequence Clustering and Redundancy Reduction Results
4M78
Sequence Clusters for the Sequence Entities in PDB 4M78
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10518
95% 3 3 10230
90% 3 3 10081
70% 3 3 9539
50% 3 3 8606
40% 3 3 7843
30% 3 3 6918
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 4999
95% 3 5 5590
90% 3 5 5592
70% 3 5 5481
50% 3 5 5134
40% 3 5 4801
30% 3 5 4336
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 5018
95% 5 9 2721
90% 5 9 2757
70% 5 9 2756
50% 5 9 2741
40% 5 9 2681
30% 5 9 2492
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4034
95% 4 7 4602
90% 4 7 4615
70% 4 7 4561
50% 4 7 4365
40% 4 7 4109
30% 4 7 3734
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4027
95% 4 7 4592
90% 4 7 4606
70% 4 7 4554
50% 4 7 4356
40% 4 7 4101
30% 4 7 3727
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 3994
95% 4 7 4564
90% 4 7 4580
70% 4 7 4526
50% 4 7 4330
40% 4 7 4078
30% 4 7 3703
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 7316
95% 3 4 7569
90% 3 4 7497
70% 3 4 7182
50% 3 4 6572
40% 3 4 6055
30% 3 4 5399
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.