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An Information Portal to 107049 Biological Macromolecular Structures

Crystal structure of Lsm2-8 complex, space group P21
Sequence Clustering and Redundancy Reduction Results
4M78
Sequence Clusters for the Sequence Entities in PDB 4M78
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10668
95% 3 3 10328
90% 3 3 10174
70% 3 3 9629
50% 3 3 8683
40% 3 3 7916
30% 3 3 6974
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 5067
95% 3 5 5666
90% 3 5 5669
70% 3 5 5543
50% 3 5 5174
40% 3 5 4842
30% 3 5 4369
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 5086
95% 5 9 2766
90% 5 9 2801
70% 5 9 2800
50% 5 9 2771
40% 5 9 2706
30% 5 9 2514
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4093
95% 4 7 4659
90% 4 7 4673
70% 4 7 4616
50% 4 7 4398
40% 4 7 4142
30% 4 7 3762
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4086
95% 4 7 4649
90% 4 7 4664
70% 4 7 4609
50% 4 7 4389
40% 4 7 4134
30% 4 7 3755
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 4053
95% 4 7 4620
90% 4 7 4637
70% 4 7 4580
50% 4 7 4362
40% 4 7 4111
30% 4 7 3731
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 7447
95% 3 4 7649
90% 3 4 7575
70% 3 4 7254
50% 3 4 6629
40% 3 4 6111
30% 3 4 5444
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.