Sequence Similarity Clusters for the Entities in PDB 4M78

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13139
95 % 3 3 12477
90 % 3 3 12272
70 % 3 3 11528
50 % 3 3 10334
40 % 3 3 9369
30 % 3 3 8171
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 6325
95 % 3 7 5703
90 % 3 7 5702
70 % 3 7 5581
50 % 3 8 4627
40 % 3 8 4394
30 % 3 8 4018
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 6340
95 % 5 11 3020
90 % 5 11 3062
70 % 5 11 3035
50 % 5 11 2964
40 % 5 11 2892
30 % 5 11 2717
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3856
95 % 4 9 4593
90 % 4 9 4607
70 % 4 9 4513
50 % 4 9 4365
40 % 4 9 4155
30 % 4 9 3822
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3847
95 % 4 9 4584
90 % 4 9 4597
70 % 4 9 4504
50 % 4 9 4354
40 % 4 9 4146
30 % 4 9 3813
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3815
95 % 4 9 4558
90 % 4 9 4572
70 % 4 9 4482
50 % 4 9 4336
40 % 4 9 4131
30 % 4 9 3794
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 9213
95 % 3 4 9274
90 % 3 4 9171
70 % 3 4 8730
50 % 3 4 7925
40 % 3 4 7266
30 % 3 4 6412

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.