Sequence Similarity Clusters for the Entities in PDB 4M78

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12802
95 % 3 3 12182
90 % 3 3 11985
70 % 3 3 11263
50 % 3 3 10100
40 % 3 3 9168
30 % 3 3 8006
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 6139
95 % 3 7 5546
90 % 3 7 5548
70 % 3 7 5433
50 % 3 8 4498
40 % 3 8 4284
30 % 3 8 3925
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 6153
95 % 5 11 2940
90 % 5 11 2984
70 % 5 11 2961
50 % 5 11 2890
40 % 5 11 2818
30 % 5 11 2643
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3753
95 % 4 9 4464
90 % 4 9 4484
70 % 4 9 4399
50 % 4 9 4248
40 % 4 9 4055
30 % 4 9 3736
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3744
95 % 4 9 4455
90 % 4 9 4474
70 % 4 9 4390
50 % 4 9 4237
40 % 4 9 4046
30 % 4 9 3727
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3710
95 % 4 9 4426
90 % 4 9 4445
70 % 4 9 4364
50 % 4 9 4219
40 % 4 9 4030
30 % 4 9 3707
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 8958
95 % 3 4 9038
90 % 3 4 8936
70 % 3 4 8502
50 % 3 4 7719
40 % 3 4 7101
30 % 3 4 6276

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.