Sequence Similarity Clusters for the Entities in PDB 4M78

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 11706
95 % 3 3 11236
90 % 3 3 11059
70 % 3 3 10425
50 % 3 3 9373
40 % 3 3 8535
30 % 3 3 7484
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5598
95 % 3 6 5455
90 % 3 6 5449
70 % 3 6 5335
50 % 3 6 5035
40 % 3 6 4717
30 % 3 6 4266
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5612
95 % 5 10 2780
90 % 5 10 2828
70 % 5 10 2826
50 % 5 10 2759
40 % 5 10 2704
30 % 5 10 2538
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 3623
95 % 4 8 4341
90 % 4 8 4373
70 % 4 8 4336
50 % 4 8 4174
40 % 4 8 3974
30 % 4 8 3655
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 3619
95 % 4 8 4336
90 % 4 8 4367
70 % 4 8 4331
50 % 4 8 4168
40 % 4 8 3967
30 % 4 8 3649
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 3608
95 % 4 8 4320
90 % 4 8 4351
70 % 4 8 4313
50 % 4 8 4155
40 % 4 8 3955
30 % 4 8 3639
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 8186
95 % 3 4 8323
90 % 3 4 8240
70 % 3 4 7854
50 % 3 4 7157
40 % 3 4 6589
30 % 3 4 5844

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.