Sequence Similarity Clusters for the Entities in PDB 4M78

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12444
95 % 3 3 11901
90 % 3 3 11708
70 % 3 3 11016
50 % 3 3 9886
40 % 3 3 8988
30 % 3 3 7861
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5942
95 % 3 7 5405
90 % 3 7 5406
70 % 3 7 5300
50 % 3 8 4390
40 % 3 8 4176
30 % 3 8 3838
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5957
95 % 5 11 2828
90 % 5 11 2871
70 % 5 11 2867
50 % 5 11 2820
40 % 5 11 2757
30 % 5 11 2575
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3636
95 % 4 9 4340
90 % 4 9 4354
70 % 4 9 4279
50 % 4 9 4144
40 % 4 9 3947
30 % 4 9 3644
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3628
95 % 4 9 4331
90 % 4 9 4344
70 % 4 9 4270
50 % 4 9 4133
40 % 4 9 3938
30 % 4 9 3635
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3596
95 % 4 9 4306
90 % 4 9 4319
70 % 4 9 4248
50 % 4 9 4117
40 % 4 9 3923
30 % 4 9 3616
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 8686
95 % 3 4 8794
90 % 3 4 8698
70 % 3 4 8285
50 % 3 4 7541
40 % 3 4 6945
30 % 3 4 6154

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.