POP-OUT | CLOSE

An Information Portal to 105212 Biological Macromolecular Structures

Crystal structure of Lsm2-8 complex, space group P21
Sequence Clustering and Redundancy Reduction Results
4M78
Sequence Clusters for the Sequence Entities in PDB 4M78
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10384
95% 3 3 10103
90% 3 3 9956
70% 3 3 9427
50% 3 3 8507
40% 3 3 7751
30% 3 3 6839
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 4914
95% 3 5 5493
90% 3 5 5501
70% 3 5 5406
50% 3 5 5069
40% 3 5 4744
30% 3 5 4292
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 4931
95% 5 9 2677
90% 5 9 2711
70% 5 9 2710
50% 5 9 2697
40% 5 9 2645
30% 5 9 2462
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 3961
95% 4 7 4524
90% 4 7 4541
70% 4 7 4488
50% 4 7 4298
40% 4 7 4051
30% 4 7 3688
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 3954
95% 4 7 4514
90% 4 7 4532
70% 4 7 4482
50% 4 7 4289
40% 4 7 4043
30% 4 7 3681
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 7 3922
95% 4 7 4486
90% 4 7 4506
70% 4 7 4454
50% 4 7 4263
40% 4 7 4020
30% 4 7 3657
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 7214
95% 3 4 7475
90% 3 4 7406
70% 3 4 7096
50% 3 4 6498
40% 3 4 5985
30% 3 4 5335
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.