Sequence Similarity Clusters for the Entities in PDB 4M75

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein Lsm1 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26904
95 % 2 2 22324
90 % 2 2 21617
70 % 2 2 19823
50 % 2 2 17239
40 % 2 2 15369
30 % 2 2 13155
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein Lsm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 6264
95 % 5 7 5648
90 % 5 7 5648
70 % 5 7 5531
50 % 5 8 4578
40 % 5 8 4356
30 % 5 8 3988
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein Lsm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 6278
95 % 7 11 3000
90 % 7 11 3041
70 % 7 11 3014
50 % 7 11 2945
40 % 7 11 2873
30 % 7 11 2699
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein Lsm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 3824
95 % 6 9 4554
90 % 6 9 4566
70 % 6 9 4471
50 % 6 9 4324
40 % 6 9 4121
30 % 6 9 3794
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein Lsm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 3815
95 % 6 9 4545
90 % 6 9 4556
70 % 6 9 4462
50 % 6 9 4313
40 % 6 9 4112
30 % 6 9 3785
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein Lsm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 3783
95 % 6 9 4518
90 % 6 9 4530
70 % 6 9 4439
50 % 6 9 4295
40 % 6 9 4097
30 % 6 9 3766
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein Lsm4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43012
95 % 1 1 32215
90 % 1 1 30858
70 % 1 1 27605
50 % 1 1 23657
40 % 1 1 20812
30 % 1 1 17624

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.