POP-OUT | CLOSE

An Information Portal to 108124 Biological Macromolecular Structures

Crystal structure of Lsm1-7 complex
Sequence Clustering and Redundancy Reduction Results
4M75
Sequence Clusters for the Sequence Entities in PDB 4M75
Entity #1: Chains: A,H - U6 snRNA-associated Sm-like protein Lsm1 protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22419
95% 2 2 18732
90% 2 2 18169
70% 2 2 16754
50% 2 2 14679
40% 2 2 13164
30% 2 2 11303
Entity #2: Chains: B,I - U6 snRNA-associated Sm-like protein Lsm2 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 5138
95% 5 5 5732
90% 5 5 5728
70% 5 5 5597
50% 5 5 5222
40% 5 5 4884
30% 5 5 4400
Entity #3: Chains: C,J - U6 snRNA-associated Sm-like protein Lsm3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 5154
95% 7 9 2796
90% 7 9 2832
70% 7 9 2831
50% 7 9 2800
40% 7 9 2732
30% 7 9 2548
Entity #4: Chains: D,K - U6 snRNA-associated Sm-like protein Lsm6 protein, length: 86 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4163
95% 6 7 4739
90% 6 7 4752
70% 6 7 4681
50% 6 7 4447
40% 6 7 4186
30% 6 7 3796
Entity #5: Chains: E,L - U6 snRNA-associated Sm-like protein Lsm5 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4154
95% 6 7 4727
90% 6 7 4741
70% 6 7 4674
50% 6 7 4438
40% 6 7 4178
30% 6 7 3789
Entity #6: Chains: F,M - U6 snRNA-associated Sm-like protein Lsm7 protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 4120
95% 6 7 4698
90% 6 7 4714
70% 6 7 4646
50% 6 7 4411
40% 6 7 4156
30% 6 7 3766
Entity #7: Chains: G,N - U6 snRNA-associated Sm-like protein Lsm4 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 36142
95% 1 1 27224
90% 1 1 26169
70% 1 1 23561
50% 1 1 20345
40% 1 1 18001
30% 1 1 15285
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.