Sequence Similarity Clusters for the Entities in PDB 4M75

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein Lsm1 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28799
95 % 2 2 23904 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 23122
70 % 2 2 21069
50 % 2 2 18236
40 % 2 2 16251
30 % 2 2 13898
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein Lsm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6796
95 % 5 8 5213 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 5 8 5233
70 % 5 8 5152
50 % 5 10 4276
40 % 5 10 4084
30 % 5 10 3773
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein Lsm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6812
95 % 7 12 2983 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 7 12 3032
70 % 7 12 2996
50 % 7 12 2951
40 % 7 12 2911
30 % 7 12 2722
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein Lsm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3733
95 % 6 10 4522 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 6 10 4542
70 % 6 10 4457
50 % 6 10 4281
40 % 6 10 4088
30 % 6 10 3777
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein Lsm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3729
95 % 6 10 4517 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 10 4537
70 % 6 10 4453
50 % 6 10 4279
40 % 6 10 4086
30 % 6 10 3775
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein Lsm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3717
95 % 6 10 4506 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 6 10 4527
70 % 6 10 4445
50 % 6 10 4269
40 % 6 10 4077
30 % 6 10 3767
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein Lsm4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45851
95 % 1 1 34323 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 32810
70 % 1 1 29216
50 % 1 1 24944
40 % 1 1 21956
30 % 1 1 18592

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.