Sequence Similarity Clusters for the Entities in PDB 4M75

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein Lsm1 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 28415
95 % 2 2 23591
90 % 2 2 22824
70 % 2 2 20816
50 % 2 2 18036
40 % 2 2 16074
30 % 2 2 13741
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein Lsm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 6697
95 % 5 8 5115
90 % 5 8 5127
70 % 5 8 5072
50 % 5 10 4222
40 % 5 10 4028
30 % 5 10 3715
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein Lsm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 6712
95 % 7 12 2932
90 % 7 12 2979
70 % 7 12 2952
50 % 7 12 2912
40 % 7 12 2872
30 % 7 12 2685
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein Lsm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 3652
95 % 6 10 4437
90 % 6 10 4458
70 % 6 10 4388
50 % 6 10 4227
40 % 6 10 4033
30 % 6 10 3720
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein Lsm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 3648
95 % 6 10 4432
90 % 6 10 4453
70 % 6 10 4385
50 % 6 10 4225
40 % 6 10 4030
30 % 6 10 3717
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein Lsm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 3638
95 % 6 10 4423
90 % 6 10 4445
70 % 6 10 4377
50 % 6 10 4216
40 % 6 10 4023
30 % 6 10 3708
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein Lsm4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45265
95 % 1 1 33898
90 % 1 1 32413
70 % 1 1 28899
50 % 1 1 24692
40 % 1 1 21727
30 % 1 1 18390

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.