Sequence Similarity Clusters for the Entities in PDB 4M75

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein Lsm1 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27928
95 % 2 2 23181 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.3
PDBFlex
90 % 2 2 22432
70 % 2 2 20518
50 % 2 2 17806
40 % 2 2 15872
30 % 2 2 13576
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein Lsm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6599
95 % 5 8 5023 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 5 8 5039
70 % 5 8 4982
50 % 5 9 4492
40 % 5 9 4263
30 % 5 9 3917
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein Lsm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6615
95 % 7 12 2895 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.9
PDBFlex
90 % 7 12 2943
70 % 7 12 2913
50 % 7 12 2875
40 % 7 12 2835
30 % 7 12 2651
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein Lsm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 3588
95 % 6 10 4370
90 % 6 10 4393
70 % 6 10 4320
50 % 6 10 4164
40 % 6 10 3973
30 % 6 10 3665
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein Lsm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3584
95 % 6 10 4365 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 10 4388
70 % 6 10 4317
50 % 6 10 4162
40 % 6 10 3970
30 % 6 10 3662
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein Lsm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3574
95 % 6 10 4356 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 10 4380
70 % 6 10 4307
50 % 6 10 4153
40 % 6 10 3964
30 % 6 10 3654
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein Lsm4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44644
95 % 1 1 33449 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 31998
70 % 1 1 28570
50 % 1 1 24439
40 % 1 1 21504
30 % 1 1 18199

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.