Sequence Similarity Clusters for the Entities in PDB 4M75

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein Lsm1 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29459
95 % 2 2 24417 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 23596
70 % 2 2 21482
50 % 2 2 18582
40 % 2 2 16546
30 % 2 2 14147
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein Lsm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6958
95 % 5 8 5348 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 5 8 5368
70 % 5 8 5277
50 % 5 10 4371
40 % 5 10 4171
30 % 5 10 3846
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein Lsm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6974
95 % 7 12 3068 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 7 12 3113
70 % 7 12 3075
50 % 7 12 3025
40 % 7 12 2974
30 % 7 12 2782
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein Lsm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3837
95 % 6 10 4635 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 6 10 4655
70 % 6 10 4563
50 % 6 10 4376
40 % 6 10 4175
30 % 6 10 3849
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein Lsm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3833
95 % 6 10 4629 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 6 10 4649
70 % 6 10 4559
50 % 6 10 4374
40 % 6 10 4173
30 % 6 10 3848
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein Lsm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 3820
95 % 6 10 4619 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 6 10 4639
70 % 6 10 4550
50 % 6 10 4363
40 % 6 10 4164
30 % 6 10 3840
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein Lsm4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46863
95 % 1 1 35028 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 33450
70 % 1 1 29751
50 % 1 1 25380
40 % 1 1 22335
30 % 1 1 18899

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures