Sequence Similarity Clusters for the Entities in PDB 4M6D

Entity #1 | Chains: A,C,E,G,I,K
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 574 640 3
95 % 625 693 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 637 710 5
70 % 848 927 7
50 % 854 935 7
40 % 883 969 11
30 % 883 969 19
Entity #2 | Chains: B,D,F,H,J,L
aptamer rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.