Sequence Similarity Clusters for the Entities in PDB 4M6D

Entity #1 | Chains: A,C,E,G,I,K
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 657 728 3
95 % 674 745 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 686 762 5
70 % 902 985 7
50 % 909 994 8
40 % 939 1029 10
30 % 939 1029 18
Entity #2 | Chains: B,D,F,H,J,L
aptamer rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures