Sequence Similarity Clusters for the Entities in PDB 4M6D

Entity #1 | Chains: A,C,E,G,I,K
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 646 717 3
95 % 663 734 3 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 675 751 5
70 % 891 974 7
50 % 897 982 8
40 % 926 1016 10
30 % 926 1016 18
Entity #2 | Chains: B,D,F,H,J,L
aptamer rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures