Sequence Similarity Clusters for the Entities in PDB 4M6D

Entity #1 | Chains: A,C,E,G,I,K
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 690 764 3
95 % 697 771 4 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 709 788 5
70 % 926 1012 7
50 % 933 1021 8
40 % 963 1056 10
30 % 963 1056 19
Entity #2 | Chains: B,D,F,H,J,L
aptamer rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures