Sequence Similarity Clusters for the Entities in PDB 4LUP

Entity #1 | Chains: A,C
RNA polymerase sigma factor protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 23282
95 % 1 3 19891 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 19341
70 % 1 3 17819
50 % 1 3 15491
40 % 1 3 13815
30 % 1 3 11818
Entity #2 | Chains: B,D
region 2 of sigmaE of E. coli dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.