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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4LFC
Sequence Clusters for the Sequence Entities in PDB 4LFC
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 265 27
95% 77 267 47
90% 77 267 49
70% 77 267 59
50% 113 382 34
40% 113 382 45
30% 113 387 65
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 268 25
95% 77 268 43
90% 77 268 45
70% 77 268 55
50% 107 376 41
40% 125 436 38
30% 125 436 51
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 29 1032
95% 77 275 35
90% 77 275 37
70% 107 388 24
50% 107 388 33
40% 107 388 44
30% 107 388 68
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 269 22
95% 77 269 41
90% 77 269 43
70% 77 269 53
50% 107 378 38
40% 107 378 51
30% 123 434 54
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 267 26
95% 77 267 48
90% 77 267 50
70% 77 267 60
50% 77 267 93
40% 77 267 119
30% 77 267 140
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 271 20
95% 81 276 32
90% 81 276 34
70% 81 276 47
50% 114 389 32
40% 114 389 43
30% 114 389 67
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 263 28
95% 77 268 45
90% 77 268 47
70% 77 268 57
50% 77 268 91
40% 77 268 117
30% 107 376 76
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 170 53
95% 77 262 49
90% 77 266 51
70% 77 266 61
50% 77 266 94
40% 77 266 120
30% 77 266 142
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 183 47
95% 72 232 61
90% 72 232 64
70% 72 232 78
50% 72 232 113
40% 72 232 138
30% 72 232 159
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 234 37
95% 72 234 59
90% 72 234 63
70% 72 234 77
50% 108 379 37
40% 108 379 49
30% 108 379 72
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 268 23
95% 77 269 38
90% 77 269 41
70% 77 269 51
50% 77 269 90
40% 107 376 53
30% 107 376 75
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 206 42
95% 77 267 46
90% 77 267 48
70% 77 267 58
50% 77 267 92
40% 77 267 118
30% 77 267 139
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 249 33
95% 77 249 52
90% 77 249 55
70% 77 249 66
50% 77 249 103
40% 77 249 130
30% 77 249 150
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 230 38
95% 71 230 62
90% 71 230 65
70% 71 230 79
50% 83 293 73
40% 83 293 98
30% 83 293 119
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 261 29
95% 77 269 39
90% 77 269 42
70% 77 269 52
50% 107 376 39
40% 107 377 52
30% 107 377 74
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 268 24
95% 77 268 42
90% 77 268 44
70% 77 268 54
50% 108 380 36
40% 108 380 48
30% 108 382 71
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 273 18
95% 85 279 29
90% 85 279 30
70% 85 279 44
50% 85 279 82
40% 85 279 106
30% 105 326 94
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 272 19
95% 78 273 36
90% 78 273 38
70% 78 273 49
50% 97 321 56
40% 97 322 73
30% 97 322 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 268 21
95% 78 268 40
90% 78 272 39
70% 78 272 50
50% 110 382 35
40% 111 384 46
30% 128 441 47
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 155 76
95% 77 268 44
90% 77 268 46
70% 77 268 56
50% 107 376 40
40% 107 376 54
30% 123 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.